Deltaproteobacteria bacterium

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; unclassified Deltaproteobacteria

Average proteome isoelectric point is 7.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2307 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A318CLF1|A0A318CLF1_9DELT Uncharacterized protein OS=Deltaproteobacteria bacterium OX=2026735 GN=C4B57_08675 PE=4 SV=1
MM1 pKa = 7.2GRR3 pKa = 11.84MVMYY7 pKa = 9.78FKK9 pKa = 10.43TLRR12 pKa = 11.84ALLLGLCIVSMAAVSWVSSSLAEE35 pKa = 4.13EE36 pKa = 4.98GNLEE40 pKa = 4.1QQVQEE45 pKa = 5.14LIQQNRR51 pKa = 11.84ALTDD55 pKa = 3.07RR56 pKa = 11.84LTEE59 pKa = 4.03VEE61 pKa = 4.11QQLNEE66 pKa = 4.09MKK68 pKa = 10.48AVPEE72 pKa = 4.04PSRR75 pKa = 11.84AEE77 pKa = 3.96GVGFLSDD84 pKa = 4.34LEE86 pKa = 4.12DD87 pKa = 4.98HH88 pKa = 6.22ITINGLLEE96 pKa = 4.15FGAAYY101 pKa = 10.31HH102 pKa = 5.56STDD105 pKa = 3.3MNHH108 pKa = 6.55SGFEE112 pKa = 4.03HH113 pKa = 7.4DD114 pKa = 4.89SDD116 pKa = 3.67ISMTSVEE123 pKa = 4.53LGIEE127 pKa = 4.01AEE129 pKa = 4.11INDD132 pKa = 4.0WVSAEE137 pKa = 4.13MILLFEE143 pKa = 5.35DD144 pKa = 3.82PSGAINTYY152 pKa = 10.09EE153 pKa = 5.3DD154 pKa = 3.45IRR156 pKa = 11.84DD157 pKa = 3.79DD158 pKa = 3.58EE159 pKa = 4.92TNFDD163 pKa = 3.68VEE165 pKa = 4.37EE166 pKa = 4.19AFITIANPDD175 pKa = 3.54VTPGFLRR182 pKa = 11.84AGKK185 pKa = 9.34MYY187 pKa = 10.82VPFGALLTHH196 pKa = 6.91FPDD199 pKa = 5.37DD200 pKa = 3.87MGIDD204 pKa = 3.67SPLTLLLGEE213 pKa = 4.4TLEE216 pKa = 4.28KK217 pKa = 10.87ALVIGAEE224 pKa = 4.12YY225 pKa = 10.91AGFTVSAYY233 pKa = 10.37VFNGDD238 pKa = 3.19VEE240 pKa = 4.42EE241 pKa = 5.41AGGGDD246 pKa = 3.86NVIEE250 pKa = 4.49TYY252 pKa = 11.07GFDD255 pKa = 3.36ANYY258 pKa = 10.8AFEE261 pKa = 6.34DD262 pKa = 3.89EE263 pKa = 5.61DD264 pKa = 4.96LGLDD268 pKa = 3.72LLVGGSYY275 pKa = 10.32ISNIADD281 pKa = 3.46SDD283 pKa = 3.63WTEE286 pKa = 3.92EE287 pKa = 4.15VLDD290 pKa = 4.78HH291 pKa = 7.05YY292 pKa = 11.35DD293 pKa = 5.46LEE295 pKa = 6.06IDD297 pKa = 4.84DD298 pKa = 4.4YY299 pKa = 12.13AEE301 pKa = 4.0GAAAYY306 pKa = 9.7LHH308 pKa = 6.43VGYY311 pKa = 10.53QGLFVEE317 pKa = 5.13AEE319 pKa = 3.77YY320 pKa = 9.53MAAVDD325 pKa = 3.71HH326 pKa = 6.47VNVEE330 pKa = 4.32GEE332 pKa = 4.42DD333 pKa = 3.55LGKK336 pKa = 8.53PTVWNIEE343 pKa = 3.38AGYY346 pKa = 10.38NYY348 pKa = 10.44NWWRR352 pKa = 11.84NLEE355 pKa = 3.87IALQYY360 pKa = 10.93AGSDD364 pKa = 3.49DD365 pKa = 4.3CGSLRR370 pKa = 11.84LPRR373 pKa = 11.84DD374 pKa = 2.93RR375 pKa = 11.84YY376 pKa = 10.71GINFNQEE383 pKa = 3.4IFDD386 pKa = 3.83NTILSVGYY394 pKa = 9.21MYY396 pKa = 10.9DD397 pKa = 3.45EE398 pKa = 4.8YY399 pKa = 11.39ATDD402 pKa = 5.42DD403 pKa = 4.04DD404 pKa = 5.02LDD406 pKa = 4.66RR407 pKa = 11.84NTRR410 pKa = 11.84DD411 pKa = 3.93LIFGQLAIEE420 pKa = 4.51FF421 pKa = 4.31

Molecular weight: 46.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A318CJK4|A0A318CJK4_9DELT t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaE OS=Deltaproteobacteria bacterium OX=2026735 GN=C4B57_09540 PE=3 SV=1
MM1 pKa = 7.44KK2 pKa = 9.6RR3 pKa = 11.84TFQPNNLKK11 pKa = 10.39RR12 pKa = 11.84KK13 pKa = 7.14RR14 pKa = 11.84THH16 pKa = 6.05GFRR19 pKa = 11.84KK20 pKa = 9.99RR21 pKa = 11.84MSTKK25 pKa = 9.76AGRR28 pKa = 11.84RR29 pKa = 11.84ILNRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.26GRR39 pKa = 11.84HH40 pKa = 5.14SLSAA44 pKa = 3.67

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2307

0

2307

678707

35

1733

294.2

32.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.881 ± 0.046

1.389 ± 0.027

5.45 ± 0.037

6.893 ± 0.054

4.101 ± 0.031

7.618 ± 0.051

2.16 ± 0.024

7.002 ± 0.039

5.883 ± 0.052

10.326 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.473 ± 0.025

3.204 ± 0.026

4.571 ± 0.036

3.009 ± 0.025

6.649 ± 0.048

5.843 ± 0.035

4.627 ± 0.028

6.747 ± 0.04

1.171 ± 0.022

3.002 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski