Jasmine virus C

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus; unclassified Carlavirus

Average proteome isoelectric point is 7.05

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A173G8H3|A0A173G8H3_9VIRU 7 kDa protein OS=Jasmine virus C OX=1853762 GN=TGB3 PE=3 SV=1
MM1 pKa = 7.58EE2 pKa = 5.82LLLNKK7 pKa = 10.23LEE9 pKa = 4.5SFGFTRR15 pKa = 11.84VSSALRR21 pKa = 11.84LPLIVHH27 pKa = 6.57CVPGAGKK34 pKa = 10.33SSLIRR39 pKa = 11.84AILEE43 pKa = 4.08DD44 pKa = 4.15SVEE47 pKa = 3.78LRR49 pKa = 11.84AYY51 pKa = 9.45TFGQADD57 pKa = 3.82QPNLIGNYY65 pKa = 8.8IRR67 pKa = 11.84PFTSDD72 pKa = 3.44SILDD76 pKa = 3.32QRR78 pKa = 11.84TIIDD82 pKa = 4.61EE83 pKa = 4.46YY84 pKa = 10.49TLSPQPIHH92 pKa = 6.8GVLALFGDD100 pKa = 4.3PRR102 pKa = 11.84QPGVDD107 pKa = 3.11QGLVANFLGNFSRR120 pKa = 11.84RR121 pKa = 11.84FGANTAIFLRR131 pKa = 11.84KK132 pKa = 9.81LGFNVHH138 pKa = 6.84AEE140 pKa = 4.23GEE142 pKa = 4.39DD143 pKa = 3.61TVRR146 pKa = 11.84VLDD149 pKa = 3.62IFKK152 pKa = 10.58AEE154 pKa = 3.89PSGVIVCFEE163 pKa = 4.36PEE165 pKa = 4.22VQKK168 pKa = 10.76LLCAHH173 pKa = 5.97NLEE176 pKa = 4.53YY177 pKa = 10.25LTAQEE182 pKa = 4.3IQGSTFQEE190 pKa = 4.05VSFIVSGPFQIEE202 pKa = 3.69RR203 pKa = 11.84ARR205 pKa = 11.84EE206 pKa = 3.78HH207 pKa = 6.23FLCLTRR213 pKa = 11.84HH214 pKa = 5.99RR215 pKa = 11.84ATLNILCPDD224 pKa = 3.38ATYY227 pKa = 7.61TTSS230 pKa = 2.8

Molecular weight: 25.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A173G8K3|A0A173G8K3_9VIRU Movement protein TGB2 OS=Jasmine virus C OX=1853762 GN=TGB2 PE=3 SV=1
MM1 pKa = 7.82RR2 pKa = 11.84YY3 pKa = 8.45EE4 pKa = 4.35LEE6 pKa = 3.98VALVINRR13 pKa = 11.84VFQARR18 pKa = 11.84GVHH21 pKa = 5.87NLALALYY28 pKa = 8.88ISKK31 pKa = 10.38KK32 pKa = 10.64AVGPCVNNGRR42 pKa = 11.84STYY45 pKa = 10.3ARR47 pKa = 11.84RR48 pKa = 11.84RR49 pKa = 11.84RR50 pKa = 11.84AKK52 pKa = 10.37SISRR56 pKa = 11.84CYY58 pKa = 9.25RR59 pKa = 11.84CYY61 pKa = 10.04RR62 pKa = 11.84VYY64 pKa = 10.69PPLCGNTRR72 pKa = 11.84CNGRR76 pKa = 11.84TCFPGINYY84 pKa = 9.83RR85 pKa = 11.84VDD87 pKa = 3.03VEE89 pKa = 4.4KK90 pKa = 11.06YY91 pKa = 9.79IKK93 pKa = 10.48FGVAAAIPNFKK104 pKa = 10.51LL105 pKa = 3.44

Molecular weight: 12.01 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2766

61

1966

461.0

51.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.195 ± 0.976

2.675 ± 0.425

4.736 ± 0.629

7.014 ± 1.103

5.748 ± 0.617

6.616 ± 0.419

2.422 ± 0.171

5.315 ± 0.818

5.676 ± 1.046

9.4 ± 0.794

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.916 ± 0.353

3.724 ± 0.544

4.338 ± 0.81

3.471 ± 0.539

6.471 ± 0.674

6.508 ± 0.332

4.808 ± 0.386

7.701 ± 0.609

0.904 ± 0.293

3.29 ± 0.415
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski