Kafue kinda chacma baboon virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Arnidovirineae; Arteriviridae; Simarterivirinae; Thetaarterivirus; Kaftartevirus; Thetaarterivirus kafuba

Average proteome isoelectric point is 7.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 14 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0Y0DFZ4|A0A0Y0DFZ4_9NIDO E protein OS=Kafue kinda chacma baboon virus OX=1823757 GN=ORF2a PE=4 SV=1
MM1 pKa = 7.85ASGLHH6 pKa = 5.74VRR8 pKa = 11.84LISCLCVFYY17 pKa = 10.68LVRR20 pKa = 11.84SSGANINSTDD30 pKa = 3.57TAPEE34 pKa = 5.09GICFLLPVKK43 pKa = 10.75HH44 pKa = 6.04NVLVNISLHH53 pKa = 5.68TLFCTNDD60 pKa = 3.32GAISMEE66 pKa = 3.55VDD68 pKa = 3.17EE69 pKa = 4.92NHH71 pKa = 6.93FGNDD75 pKa = 3.55DD76 pKa = 3.83CPLSGFKK83 pKa = 10.25PHH85 pKa = 7.02GSTTGKK91 pKa = 10.36YY92 pKa = 10.65GSFLHH97 pKa = 6.38MSDD100 pKa = 3.79INFPLNLTTDD110 pKa = 3.81PSHH113 pKa = 8.29VYY115 pKa = 8.44ITILLTYY122 pKa = 10.64LMANFPQVLIPNHH135 pKa = 5.39NTSLPLALNATVTNTTWQFCINSTNIPSVGSGPIVDD171 pKa = 5.61LYY173 pKa = 9.03TTGPPWGLYY182 pKa = 9.59YY183 pKa = 9.94MEE185 pKa = 5.38LLRR188 pKa = 11.84PFLLSLLMLGLSHH201 pKa = 7.63II202 pKa = 4.67

Molecular weight: 22.12 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0Y0BL84|A0A0Y0BL84_9NIDO N protein OS=Kafue kinda chacma baboon virus OX=1823757 GN=ORF7 PE=4 SV=1
MM1 pKa = 7.24VSSICSDD8 pKa = 3.31PGYY11 pKa = 7.77TTIAFTAAPIVIACLRR27 pKa = 11.84LFRR30 pKa = 11.84PCLRR34 pKa = 11.84GFFCALCIATLAYY47 pKa = 10.21AATAFQEE54 pKa = 4.31HH55 pKa = 6.43SLATIVTISFACIYY69 pKa = 10.55CGFKK73 pKa = 10.53LLQWIIIRR81 pKa = 11.84FRR83 pKa = 11.84MCRR86 pKa = 11.84LGPGYY91 pKa = 10.13ILSSPNHH98 pKa = 5.95VDD100 pKa = 2.97SSLGRR105 pKa = 11.84YY106 pKa = 7.8PITGTGSSAIVTRR119 pKa = 11.84RR120 pKa = 11.84SGMTIANNQLIPDD133 pKa = 4.48VKK135 pKa = 10.86RR136 pKa = 11.84MVLAGKK142 pKa = 9.75IATKK146 pKa = 10.28KK147 pKa = 10.64GLVNLRR153 pKa = 11.84KK154 pKa = 10.28YY155 pKa = 10.34GWQKK159 pKa = 9.55TKK161 pKa = 11.02

Molecular weight: 17.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

14

0

14

8350

50

3535

596.4

65.29

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.287 ± 0.273

3.102 ± 0.157

4.084 ± 0.514

3.377 ± 0.338

4.683 ± 0.284

6.982 ± 0.551

3.054 ± 0.334

5.21 ± 0.427

3.796 ± 0.302

10.527 ± 0.549

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.617 ± 0.109

3.593 ± 0.342

6.671 ± 0.531

3.114 ± 0.362

4.659 ± 0.295

7.988 ± 0.299

6.743 ± 0.389

7.593 ± 0.365

1.102 ± 0.196

3.82 ± 0.1
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski