Elderberry latent virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Procedovirinae; Pelarspovirus

Average proteome isoelectric point is 8.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B4MJW8|A0A0B4MJW8_9TOMB Putative movement protein 2 OS=Elderberry latent virus OX=167018 GN=p9 PE=4 SV=1
MM1 pKa = 7.49GLITQCIWFGAYY13 pKa = 9.78VGFKK17 pKa = 8.16VTKK20 pKa = 9.54EE21 pKa = 3.69LALLGPEE28 pKa = 4.25LTSITLSCGFPEE40 pKa = 4.38INPVLAAIGLPTVDD54 pKa = 5.11YY55 pKa = 10.48IPEE58 pKa = 4.08VNQVDD63 pKa = 3.96VLMATNDD70 pKa = 4.53AILHH74 pKa = 5.43TPDD77 pKa = 3.56VEE79 pKa = 5.17LEE81 pKa = 4.26TEE83 pKa = 4.31LEE85 pKa = 4.12DD86 pKa = 5.03SRR88 pKa = 11.84VLTIAEE94 pKa = 4.44PEE96 pKa = 4.2TSRR99 pKa = 11.84VTTVVKK105 pKa = 9.62TRR107 pKa = 11.84RR108 pKa = 11.84PKK110 pKa = 10.02NRR112 pKa = 11.84RR113 pKa = 11.84TFACVLAAEE122 pKa = 4.96AKK124 pKa = 9.3NHH126 pKa = 6.44FGGMPRR132 pKa = 11.84NSRR135 pKa = 11.84ANEE138 pKa = 3.89LSVMKK143 pKa = 10.28YY144 pKa = 10.31LVGKK148 pKa = 9.58CQDD151 pKa = 3.45HH152 pKa = 7.09KK153 pKa = 10.97LTALQTRR160 pKa = 11.84EE161 pKa = 3.6VAAQAFALTFTPDD174 pKa = 3.18ANDD177 pKa = 3.08KK178 pKa = 10.88FIYY181 pKa = 10.05TFLNSEE187 pKa = 4.0DD188 pKa = 4.04AYY190 pKa = 11.03DD191 pKa = 3.75RR192 pKa = 11.84RR193 pKa = 11.84CDD195 pKa = 3.67YY196 pKa = 11.21VKK198 pKa = 10.91SQGVDD203 pKa = 3.6PMWLRR208 pKa = 11.84LLKK211 pKa = 10.59RR212 pKa = 11.84PFSRR216 pKa = 11.84KK217 pKa = 6.31EE218 pKa = 3.55WKK220 pKa = 9.97QVVCKK225 pKa = 10.29FMGFGTRR232 pKa = 11.84EE233 pKa = 3.73AYY235 pKa = 9.43TFIKK239 pKa = 10.56

Molecular weight: 26.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q911J7|Q911J7_9TOMB Capsid protein OS=Elderberry latent virus OX=167018 GN=p37 PE=3 SV=1
MM1 pKa = 7.53ANKK4 pKa = 10.35SPVVVAAAGRR14 pKa = 11.84GEE16 pKa = 4.08LWAVKK21 pKa = 10.08LSSLGWRR28 pKa = 11.84SLSKK32 pKa = 10.46AQKK35 pKa = 9.96ASARR39 pKa = 11.84AAGIGAVPQSAIIPRR54 pKa = 11.84TTRR57 pKa = 11.84LIAGNPTNSRR67 pKa = 11.84RR68 pKa = 11.84TRR70 pKa = 11.84DD71 pKa = 3.4APGNAQKK78 pKa = 11.43SMTVFKK84 pKa = 11.25SEE86 pKa = 4.33FLGEE90 pKa = 3.78LHH92 pKa = 7.27ADD94 pKa = 3.36NTIRR98 pKa = 11.84SYY100 pKa = 11.62KK101 pKa = 10.0LDD103 pKa = 3.58PRR105 pKa = 11.84NVRR108 pKa = 11.84TFPHH112 pKa = 6.46ISDD115 pKa = 4.47LARR118 pKa = 11.84GFNKK122 pKa = 10.41YY123 pKa = 10.29KK124 pKa = 9.74FTDD127 pKa = 3.29VKK129 pKa = 10.68VRR131 pKa = 11.84YY132 pKa = 8.96SSKK135 pKa = 10.68VQDD138 pKa = 4.1SEE140 pKa = 4.7CGLTIAFSADD150 pKa = 3.16SSDD153 pKa = 3.36PAPRR157 pKa = 11.84GKK159 pKa = 10.41FDD161 pKa = 5.19LYY163 pKa = 11.45ALGSKK168 pKa = 10.39VEE170 pKa = 4.36GAAHH174 pKa = 6.93KK175 pKa = 10.46NLLYY179 pKa = 9.92TVPVDD184 pKa = 2.89KK185 pKa = 10.9GQRR188 pKa = 11.84FLRR191 pKa = 11.84DD192 pKa = 3.47GEE194 pKa = 4.16GDD196 pKa = 3.31NAKK199 pKa = 10.26EE200 pKa = 3.57VDD202 pKa = 3.25AGVIYY207 pKa = 11.05VLMDD211 pKa = 4.13GAHH214 pKa = 6.63DD215 pKa = 3.73TRR217 pKa = 11.84AGEE220 pKa = 4.23LFLEE224 pKa = 4.64VTVVLSQPTYY234 pKa = 8.64NQRR237 pKa = 11.84STQYY241 pKa = 10.77ISGTEE246 pKa = 3.82HH247 pKa = 7.08RR248 pKa = 11.84GGPNYY253 pKa = 10.51VNITKK258 pKa = 10.23SANTMTLTFQAAGTFLLCSYY278 pKa = 10.53SSPLEE283 pKa = 3.85KK284 pKa = 10.35VGRR287 pKa = 11.84LSLADD292 pKa = 3.89ADD294 pKa = 3.97QSQVDD299 pKa = 3.94SANNSSNIIEE309 pKa = 4.38AVVTTPGGSIVYY321 pKa = 8.25YY322 pKa = 10.09FKK324 pKa = 11.05SRR326 pKa = 11.84EE327 pKa = 3.93QMSFRR332 pKa = 11.84AYY334 pKa = 9.52VGRR337 pKa = 11.84MM338 pKa = 3.2

Molecular weight: 36.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1485

64

762

297.0

33.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.609 ± 1.205

1.751 ± 0.507

5.32 ± 0.459

5.32 ± 0.952

4.512 ± 0.267

6.801 ± 0.526

2.155 ± 0.32

4.444 ± 0.229

6.128 ± 0.441

9.091 ± 0.868

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.424 ± 0.359

3.838 ± 0.335

4.714 ± 0.407

3.03 ± 0.253

6.667 ± 0.605

7.003 ± 1.519

6.397 ± 0.752

7.879 ± 0.239

1.212 ± 0.379

3.636 ± 0.341
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski