Capybara microvirus Cap1_SP_104

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V1FVN7|A0A4V1FVN7_9VIRU Uncharacterized protein OS=Capybara microvirus Cap1_SP_104 OX=2584803 PE=4 SV=1
MM1 pKa = 7.46SVLDD5 pKa = 4.73PIRR8 pKa = 11.84SRR10 pKa = 11.84ISEE13 pKa = 3.94EE14 pKa = 3.53MLYY17 pKa = 10.99DD18 pKa = 4.11GMHH21 pKa = 6.15EE22 pKa = 4.01QLDD25 pKa = 4.0LRR27 pKa = 11.84ILLSADD33 pKa = 3.19GKK35 pKa = 10.12PILTHH40 pKa = 5.58YY41 pKa = 10.49VPSLEE46 pKa = 4.17LSSMYY51 pKa = 10.68DD52 pKa = 3.56LEE54 pKa = 5.27SMLKK58 pKa = 10.52VGITPSGSLHH68 pKa = 6.86CDD70 pKa = 2.9GNSRR74 pKa = 11.84LDD76 pKa = 3.55SFEE79 pKa = 5.59SNITDD84 pKa = 4.16FQTLADD90 pKa = 4.24SFTDD94 pKa = 3.4KK95 pKa = 11.3PEE97 pKa = 3.65

Molecular weight: 10.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W4W9|A0A4P8W4W9_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_104 OX=2584803 PE=4 SV=1
MM1 pKa = 7.17LTSDD5 pKa = 4.99LIRR8 pKa = 11.84NKK10 pKa = 10.1SCYY13 pKa = 10.11YY14 pKa = 9.26YY15 pKa = 8.12PTRR18 pKa = 11.84NRR20 pKa = 11.84SHH22 pKa = 6.46FRR24 pKa = 11.84VSRR27 pKa = 11.84SDD29 pKa = 3.68LYY31 pKa = 11.07SSRR34 pKa = 11.84VSKK37 pKa = 10.52ILSYY41 pKa = 9.63SVRR44 pKa = 11.84LYY46 pKa = 11.42YY47 pKa = 10.44EE48 pKa = 3.91FLEE51 pKa = 4.49CTEE54 pKa = 3.93CGGRR58 pKa = 11.84VFFYY62 pKa = 10.57TLTYY66 pKa = 10.62NDD68 pKa = 4.14LSIPTLYY75 pKa = 10.81GCPCFDD81 pKa = 4.1YY82 pKa = 11.4NDD84 pKa = 3.25IRR86 pKa = 11.84DD87 pKa = 4.1FVHH90 pKa = 7.13GAFQKK95 pKa = 10.69KK96 pKa = 8.71LCRR99 pKa = 11.84DD100 pKa = 4.7FGCTMKK106 pKa = 10.95YY107 pKa = 10.67AVFCEE112 pKa = 3.9RR113 pKa = 11.84GEE115 pKa = 4.42GKK117 pKa = 10.41GKK119 pKa = 10.45RR120 pKa = 11.84GFGNNPHH127 pKa = 5.7YY128 pKa = 10.68HH129 pKa = 5.9VIFYY133 pKa = 9.23LYY135 pKa = 9.41PKK137 pKa = 9.23EE138 pKa = 3.99GKK140 pKa = 10.29RR141 pKa = 11.84FDD143 pKa = 3.99FVADD147 pKa = 3.71EE148 pKa = 4.26VTLLVRR154 pKa = 11.84KK155 pKa = 9.14YY156 pKa = 8.67WQGDD160 pKa = 3.54CRR162 pKa = 11.84PFDD165 pKa = 3.74VDD167 pKa = 3.86GVNPQSFKK175 pKa = 11.12YY176 pKa = 10.62GIVQVGKK183 pKa = 10.46YY184 pKa = 9.18GAEE187 pKa = 3.86ALDD190 pKa = 3.56YY191 pKa = 10.97RR192 pKa = 11.84AFRR195 pKa = 11.84YY196 pKa = 8.28CAKK199 pKa = 10.6YY200 pKa = 9.96CVKK203 pKa = 10.55DD204 pKa = 3.57AADD207 pKa = 3.65LSVNRR212 pKa = 11.84QIWSSFLKK220 pKa = 10.75DD221 pKa = 3.46FEE223 pKa = 4.5EE224 pKa = 4.76SVKK227 pKa = 10.67NDD229 pKa = 2.96QVLIDD234 pKa = 3.83KK235 pKa = 10.62YY236 pKa = 10.47MYY238 pKa = 11.0AHH240 pKa = 6.14NQYY243 pKa = 10.46SCSIRR248 pKa = 11.84DD249 pKa = 3.56AEE251 pKa = 4.88LSRR254 pKa = 11.84GLPKK258 pKa = 10.26RR259 pKa = 11.84EE260 pKa = 3.53FTFFDD265 pKa = 4.02CATNYY270 pKa = 9.74HH271 pKa = 6.56RR272 pKa = 11.84FFEE275 pKa = 4.23FHH277 pKa = 7.54KK278 pKa = 10.65DD279 pKa = 3.06TLQPILDD286 pKa = 3.93KK287 pKa = 11.02EE288 pKa = 4.11RR289 pKa = 11.84SLFLNRR295 pKa = 11.84FCARR299 pKa = 11.84VRR301 pKa = 11.84ISQGVGISALKK312 pKa = 10.34KK313 pKa = 10.65VIEE316 pKa = 4.85HH317 pKa = 7.59DD318 pKa = 4.26DD319 pKa = 3.86GSLSVPLPSKK329 pKa = 11.0NSFEE333 pKa = 5.48DD334 pKa = 3.36IRR336 pKa = 11.84ISDD339 pKa = 3.65YY340 pKa = 11.34LLRR343 pKa = 11.84KK344 pKa = 9.65LLYY347 pKa = 9.82DD348 pKa = 3.64VKK350 pKa = 10.8KK351 pKa = 11.01DD352 pKa = 3.82PITGNNYY359 pKa = 7.73YY360 pKa = 9.25TLNEE364 pKa = 4.05YY365 pKa = 9.79GQSIKK370 pKa = 10.06MKK372 pKa = 10.01QLQPSIARR380 pKa = 11.84LADD383 pKa = 3.32KK384 pKa = 10.83AFSLVSSNPDD394 pKa = 3.06YY395 pKa = 11.35NSIYY399 pKa = 10.28EE400 pKa = 4.46SYY402 pKa = 11.21SSADD406 pKa = 2.94HH407 pKa = 6.96DD408 pKa = 4.44FRR410 pKa = 11.84WSSGAMLRR418 pKa = 11.84SALSSCTLEE427 pKa = 4.36LCSLYY432 pKa = 11.09ALYY435 pKa = 10.73KK436 pKa = 9.94KK437 pKa = 10.61VYY439 pKa = 8.21EE440 pKa = 4.26FRR442 pKa = 11.84SFAIRR447 pKa = 11.84DD448 pKa = 3.7FQFDD452 pKa = 4.3GVPSLDD458 pKa = 3.88PLADD462 pKa = 3.76YY463 pKa = 11.26YY464 pKa = 11.21STLFDD469 pKa = 3.36FHH471 pKa = 8.01QPILFGQFYY480 pKa = 10.25SHH482 pKa = 7.78DD483 pKa = 3.68GSEE486 pKa = 4.37CFDD489 pKa = 4.58PYY491 pKa = 10.67FIPYY495 pKa = 8.82SAHH498 pKa = 7.2PIFAPHH504 pKa = 6.7FDD506 pKa = 4.09SFCALDD512 pKa = 3.56ILLDD516 pKa = 3.64YY517 pKa = 10.27ATFQDD522 pKa = 3.67QEE524 pKa = 4.37VKK526 pKa = 10.44SRR528 pKa = 11.84RR529 pKa = 11.84DD530 pKa = 3.14AEE532 pKa = 3.75NRR534 pKa = 11.84RR535 pKa = 11.84IKK537 pKa = 10.69NFHH540 pKa = 5.78NNKK543 pKa = 9.38KK544 pKa = 9.23FKK546 pKa = 10.25HH547 pKa = 5.69YY548 pKa = 10.36SLCPFF553 pKa = 4.6

Molecular weight: 64.76 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1666

97

610

416.5

47.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.942 ± 1.041

1.801 ± 0.673

6.723 ± 0.765

5.402 ± 0.92

6.002 ± 1.242

5.402 ± 0.702

1.981 ± 0.409

5.222 ± 0.409

5.582 ± 0.631

9.364 ± 0.471

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.281 ± 0.611

5.222 ± 0.64

4.262 ± 0.267

3.842 ± 1.295

5.402 ± 0.529

10.264 ± 0.463

4.262 ± 0.581

4.562 ± 0.342

0.96 ± 0.251

5.522 ± 0.891
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski