Candidatus Omnitrophus magneticus

Taxonomy: cellular organisms; Bacteria; PVC group; Candidatus Omnitrophica; Candidatus Omnitrophus

Average proteome isoelectric point is 7.38

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2573 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F0CPF6|A0A0F0CPF6_9BACT Uncharacterized protein OS=Candidatus Omnitrophus magneticus OX=1609969 GN=OMAG_000979 PE=4 SV=1
MM1 pKa = 8.17IMGLQAMLRR10 pKa = 11.84DD11 pKa = 3.95QVDD14 pKa = 4.33PDD16 pKa = 3.95PEE18 pKa = 6.03AYY20 pKa = 10.2DD21 pKa = 3.49PGIFEE26 pKa = 5.28TYY28 pKa = 9.49WEE30 pKa = 4.59LCVKK34 pKa = 10.61ALIAEE39 pKa = 4.55FEE41 pKa = 4.4SLIYY45 pKa = 10.3MSFF48 pKa = 3.09

Molecular weight: 5.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F0CIS9|A0A0F0CIS9_9BACT 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Candidatus Omnitrophus magneticus OX=1609969 GN=fabZ PE=3 SV=1
MM1 pKa = 7.86PKK3 pKa = 10.52LKK5 pKa = 9.84TNKK8 pKa = 9.46GVRR11 pKa = 11.84KK12 pKa = 9.43RR13 pKa = 11.84FKK15 pKa = 8.88VSKK18 pKa = 9.66RR19 pKa = 11.84GKK21 pKa = 8.77VLRR24 pKa = 11.84AKK26 pKa = 10.45AGRR29 pKa = 11.84RR30 pKa = 11.84HH31 pKa = 6.29LLTGKK36 pKa = 8.98SRR38 pKa = 11.84KK39 pKa = 9.14RR40 pKa = 11.84KK41 pKa = 9.18RR42 pKa = 11.84SLRR45 pKa = 11.84QPAGISPAQTKK56 pKa = 8.1TIKK59 pKa = 10.87AMLPYY64 pKa = 10.5SS65 pKa = 3.62

Molecular weight: 7.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2573

0

2573

789100

29

5641

306.7

34.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.11 ± 0.05

1.022 ± 0.021

5.233 ± 0.042

7.143 ± 0.064

4.987 ± 0.049

6.253 ± 0.052

1.592 ± 0.018

9.298 ± 0.061

8.901 ± 0.06

9.343 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.335 ± 0.023

5.276 ± 0.042

3.254 ± 0.031

2.494 ± 0.029

4.425 ± 0.033

6.575 ± 0.039

4.971 ± 0.044

5.979 ± 0.039

0.988 ± 0.021

3.82 ± 0.051
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski