Hydatigena taeniaeformis (Feline tapeworm) (Taenia taeniaeformis)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Spiralia; Lophotrochozoa; Platyhelminthes; Cestoda; Eucestoda; Cyclophyllidea; Taeniidae; Hydatigera

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11591 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A158RDK7|A0A158RDK7_HYDTA Uncharacterized protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS855 PE=4 SV=1
MM1 pKa = 7.45LQPGYY6 pKa = 10.72QRR8 pKa = 11.84TSSQFPIILANCSPPSNFVEE28 pKa = 5.0GSPSTVSPSTLTLSPNEE45 pKa = 3.96NDD47 pKa = 3.11IDD49 pKa = 4.5CDD51 pKa = 3.92LVQDD55 pKa = 4.55DD56 pKa = 4.4VLEE59 pKa = 4.72AGSFQSKK66 pKa = 9.43PCSKK70 pKa = 10.87SPFPLPEE77 pKa = 3.94EE78 pKa = 4.09LVDD81 pKa = 4.45FVNSYY86 pKa = 10.9AFSGKK91 pKa = 6.48THH93 pKa = 6.85LSIEE97 pKa = 4.23EE98 pKa = 4.21MLCDD102 pKa = 4.53TPDD105 pKa = 3.84LPDD108 pKa = 3.31TLFPLDD114 pKa = 3.62SLGG117 pKa = 3.7

Molecular weight: 12.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3P7FA28|A0A3P7FA28_HYDTA Uncharacterized protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS4788 PE=4 SV=1
MM1 pKa = 6.32WWRR4 pKa = 11.84WLRR7 pKa = 11.84LRR9 pKa = 11.84WRR11 pKa = 11.84RR12 pKa = 11.84LRR14 pKa = 11.84LRR16 pKa = 11.84RR17 pKa = 11.84LRR19 pKa = 11.84WLRR22 pKa = 11.84LWLRR26 pKa = 11.84LRR28 pKa = 11.84WLRR31 pKa = 11.84LWLRR35 pKa = 11.84LRR37 pKa = 11.84LWLWLGLRR45 pKa = 11.84LRR47 pKa = 11.84CRR49 pKa = 11.84SFF51 pKa = 3.09

Molecular weight: 7.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11591

0

11591

4628800

29

7525

399.3

44.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.368 ± 0.022

2.144 ± 0.015

5.061 ± 0.02

6.229 ± 0.028

4.014 ± 0.018

5.816 ± 0.032

2.517 ± 0.01

4.892 ± 0.017

4.624 ± 0.023

9.914 ± 0.033

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.164 ± 0.01

3.96 ± 0.013

5.752 ± 0.029

3.948 ± 0.018

6.229 ± 0.019

9.25 ± 0.031

5.864 ± 0.018

6.496 ± 0.019

1.091 ± 0.008

2.631 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski