Tannerella forsythia (strain ATCC 43037 / JCM 10827 / CCUG 33226 / KCTC 5666 / FDC 338) (Bacteroides forsythus)

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Tannerellaceae; Tannerella; Tannerella forsythia

Average proteome isoelectric point is 6.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2978 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G8UK42|G8UK42_TANFA Uncharacterized protein OS=Tannerella forsythia (strain ATCC 43037 / JCM 10827 / CCUG 33226 / KCTC 5666 / FDC 338) OX=203275 GN=BFO_0346 PE=4 SV=1
MM1 pKa = 7.48KK2 pKa = 10.09KK3 pKa = 10.1YY4 pKa = 10.52RR5 pKa = 11.84CIVCDD10 pKa = 3.71YY11 pKa = 10.44IYY13 pKa = 10.89DD14 pKa = 4.07PVEE17 pKa = 4.26GDD19 pKa = 3.5PDD21 pKa = 3.9GGIDD25 pKa = 3.74PGTAFEE31 pKa = 6.02DD32 pKa = 4.23IPDD35 pKa = 3.74DD36 pKa = 4.06WVCPLCGVGKK46 pKa = 10.3DD47 pKa = 3.4DD48 pKa = 4.99FEE50 pKa = 4.51PVEE53 pKa = 4.05

Molecular weight: 5.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G8UKB5|G8UKB5_TANFA Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase OS=Tannerella forsythia (strain ATCC 43037 / JCM 10827 / CCUG 33226 / KCTC 5666 / FDC 338) OX=203275 GN=BFO_1375 PE=4 SV=1
MM1 pKa = 7.79RR2 pKa = 11.84PMIKK6 pKa = 8.66KK7 pKa = 8.31TKK9 pKa = 8.39RR10 pKa = 11.84QQLGRR15 pKa = 11.84VLNIALNVFNGISMIIIGFLLMRR38 pKa = 11.84VFVFGSS44 pKa = 3.28

Molecular weight: 5.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2978

0

2978

978559

37

3058

328.6

37.18

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.098 ± 0.044

1.2 ± 0.019

5.418 ± 0.03

6.416 ± 0.045

4.666 ± 0.035

6.837 ± 0.044

2.086 ± 0.022

6.742 ± 0.039

6.282 ± 0.045

9.093 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.752 ± 0.022

4.693 ± 0.039

3.888 ± 0.027

3.348 ± 0.027

5.563 ± 0.038

6.107 ± 0.039

5.775 ± 0.044

6.394 ± 0.037

1.234 ± 0.017

4.408 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski