Bacteroides coprosuis DSM 18011

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides coprosuis

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2385 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F3ZRC5|F3ZRC5_9BACE Fumble domain protein OS=Bacteroides coprosuis DSM 18011 OX=679937 GN=Bcop_1742 PE=4 SV=1
MM1 pKa = 7.51KK2 pKa = 10.22KK3 pKa = 10.16YY4 pKa = 10.18VCTVCGYY11 pKa = 10.9VYY13 pKa = 10.63DD14 pKa = 4.41PAEE17 pKa = 4.51GDD19 pKa = 3.56PDD21 pKa = 4.11NGIKK25 pKa = 10.36PGTAFEE31 pKa = 5.13DD32 pKa = 4.83LPDD35 pKa = 3.86DD36 pKa = 4.25WVCPEE41 pKa = 4.48CGVGKK46 pKa = 10.47EE47 pKa = 4.09DD48 pKa = 5.04FEE50 pKa = 4.85PSEE53 pKa = 4.39DD54 pKa = 3.43

Molecular weight: 5.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F3ZUL3|F3ZUL3_9BACE Xanthine/uracil/vitamin C permease OS=Bacteroides coprosuis DSM 18011 OX=679937 GN=Bcop_0971 PE=4 SV=1
MM1 pKa = 7.66RR2 pKa = 11.84RR3 pKa = 11.84NNAEE7 pKa = 3.86KK8 pKa = 10.77VGDD11 pKa = 3.4ILRR14 pKa = 11.84RR15 pKa = 11.84FLRR18 pKa = 11.84QEE20 pKa = 4.0SLEE23 pKa = 4.25SPLNEE28 pKa = 4.88QRR30 pKa = 11.84LLDD33 pKa = 4.12LWPKK37 pKa = 10.51VLGPTMARR45 pKa = 11.84YY46 pKa = 6.83TRR48 pKa = 11.84KK49 pKa = 9.81IYY51 pKa = 10.14IHH53 pKa = 5.77NQILYY58 pKa = 9.66VHH60 pKa = 6.64LTSAALRR67 pKa = 11.84QEE69 pKa = 4.23LMMGRR74 pKa = 11.84EE75 pKa = 3.89LLVRR79 pKa = 11.84KK80 pKa = 9.95LNQEE84 pKa = 3.48VGANVITNIIFRR96 pKa = 4.32

Molecular weight: 11.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2385

0

2385

839534

31

1932

352.0

39.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.321 ± 0.043

0.982 ± 0.018

5.615 ± 0.033

6.758 ± 0.054

4.749 ± 0.032

6.293 ± 0.05

1.912 ± 0.021

7.94 ± 0.046

7.582 ± 0.044

9.511 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.464 ± 0.022

5.448 ± 0.042

3.522 ± 0.025

3.541 ± 0.024

3.886 ± 0.032

6.49 ± 0.035

5.347 ± 0.032

6.19 ± 0.041

1.102 ± 0.02

4.346 ± 0.041
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski