Capybara microvirus Cap3_SP_407

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W5T9|A0A4P8W5T9_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_407 OX=2585445 PE=4 SV=1
MM1 pKa = 7.71SNFNGVNNLPRR12 pKa = 11.84SLGDD16 pKa = 3.39CYY18 pKa = 10.94NYY20 pKa = 10.61PFMSPSDD27 pKa = 3.39ITDD30 pKa = 3.17EE31 pKa = 4.16NGITRR36 pKa = 11.84VVFVCTPPPDD46 pKa = 4.82LGTLDD51 pKa = 5.03LYY53 pKa = 11.52SDD55 pKa = 5.0DD56 pKa = 4.2VLANNGIYY64 pKa = 10.35NVASFSPVGSRR75 pKa = 11.84LSGISRR81 pKa = 11.84VDD83 pKa = 3.05KK84 pKa = 11.2SLGDD88 pKa = 3.81VVSKK92 pKa = 11.01LPTPHH97 pKa = 7.06PQPQPEE103 pKa = 4.34TDD105 pKa = 3.11NKK107 pKa = 10.97

Molecular weight: 11.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W613|A0A4P8W613_9VIRU Replication initiator protein OS=Capybara microvirus Cap3_SP_407 OX=2585445 PE=4 SV=1
MM1 pKa = 7.24IAFMHH6 pKa = 6.37FYY8 pKa = 10.5VYY10 pKa = 10.52KK11 pKa = 10.49CYY13 pKa = 10.29YY14 pKa = 10.01LCANMYY20 pKa = 9.93LCIVKK25 pKa = 10.13SIKK28 pKa = 10.17LIIMEE33 pKa = 4.33IPNVRR38 pKa = 11.84SIYY41 pKa = 10.33GVFIKK46 pKa = 10.38RR47 pKa = 11.84VEE49 pKa = 4.1SSLKK53 pKa = 10.52RR54 pKa = 11.84KK55 pKa = 9.36GLQPLRR61 pKa = 11.84FKK63 pKa = 10.94LFKK66 pKa = 10.57FDD68 pKa = 4.74DD69 pKa = 3.77SSVYY73 pKa = 10.31QLVILPSNDD82 pKa = 3.14FGCFCQNTIVVVSRR96 pKa = 11.84LCDD99 pKa = 3.12KK100 pKa = 10.92FGYY103 pKa = 10.19NFLIGVEE110 pKa = 4.23KK111 pKa = 10.91NGTEE115 pKa = 3.78FVPYY119 pKa = 9.94FFVNFF124 pKa = 3.83

Molecular weight: 14.6 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1591

107

581

318.2

36.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.783 ± 1.286

1.32 ± 0.436

6.223 ± 0.824

4.965 ± 1.0

5.468 ± 1.018

5.531 ± 0.555

1.697 ± 0.582

5.343 ± 0.427

5.343 ± 0.486

8.171 ± 0.547

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.074 ± 0.218

5.72 ± 0.731

4.714 ± 0.813

4.337 ± 0.994

4.84 ± 0.599

9.302 ± 0.837

5.657 ± 0.913

5.72 ± 0.924

1.006 ± 0.256

6.788 ± 0.995
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski