Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_441

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.043AlaAla: 5.043 ± 1.932
1.441AlaCys: 1.441 ± 0.458
6.484AlaAsp: 6.484 ± 2.659
4.323AlaGlu: 4.323 ± 2.744
1.441AlaPhe: 1.441 ± 0.909
4.323AlaGly: 4.323 ± 2.333
1.441AlaHis: 1.441 ± 0.841
2.161AlaIle: 2.161 ± 1.33
5.043AlaLys: 5.043 ± 3.725
2.882AlaLeu: 2.882 ± 2.692
4.323AlaMet: 4.323 ± 2.238
5.764AlaAsn: 5.764 ± 3.332
2.882AlaPro: 2.882 ± 1.985
2.882AlaGln: 2.882 ± 1.234
2.161AlaArg: 2.161 ± 0.649
0.72AlaSer: 0.72 ± 0.496
5.043AlaThr: 5.043 ± 1.002
1.441AlaVal: 1.441 ± 0.992
2.882AlaTrp: 2.882 ± 0.917
2.161AlaTyr: 2.161 ± 1.488
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
1.441CysCys: 1.441 ± 0.458
0.0CysAsp: 0.0 ± 0.0
0.72CysGlu: 0.72 ± 0.544
0.72CysPhe: 0.72 ± 0.544
2.161CysGly: 2.161 ± 1.324
0.0CysHis: 0.0 ± 0.0
0.72CysIle: 0.72 ± 0.702
0.72CysLys: 0.72 ± 0.496
2.161CysLeu: 2.161 ± 0.875
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.72CysGln: 0.72 ± 0.496
1.441CysArg: 1.441 ± 1.088
0.72CysSer: 0.72 ± 0.496
0.0CysThr: 0.0 ± 0.0
0.72CysVal: 0.72 ± 0.496
0.0CysTrp: 0.0 ± 0.0
1.441CysTyr: 1.441 ± 0.458
0.0CysXaa: 0.0 ± 0.0
Asp
2.161AspAla: 2.161 ± 1.488
0.0AspCys: 0.0 ± 0.0
1.441AspAsp: 1.441 ± 0.992
7.925AspGlu: 7.925 ± 1.549
3.602AspPhe: 3.602 ± 1.567
1.441AspGly: 1.441 ± 1.935
1.441AspHis: 1.441 ± 0.458
3.602AspIle: 3.602 ± 1.705
2.882AspLys: 2.882 ± 1.482
5.764AspLeu: 5.764 ± 1.566
1.441AspMet: 1.441 ± 1.101
2.161AspAsn: 2.161 ± 0.737
0.0AspPro: 0.0 ± 0.0
0.0AspGln: 0.0 ± 0.0
1.441AspArg: 1.441 ± 0.458
2.161AspSer: 2.161 ± 1.26
7.205AspThr: 7.205 ± 2.439
1.441AspVal: 1.441 ± 0.992
0.0AspTrp: 0.0 ± 0.0
2.882AspTyr: 2.882 ± 1.236
0.0AspXaa: 0.0 ± 0.0
Glu
2.161GluAla: 2.161 ± 0.785
0.72GluCys: 0.72 ± 0.496
4.323GluAsp: 4.323 ± 2.017
5.043GluGlu: 5.043 ± 2.642
3.602GluPhe: 3.602 ± 0.523
0.72GluGly: 0.72 ± 0.967
1.441GluHis: 1.441 ± 0.992
3.602GluIle: 3.602 ± 1.975
12.248GluLys: 12.248 ± 5.04
5.043GluLeu: 5.043 ± 2.063
0.72GluMet: 0.72 ± 0.544
7.205GluAsn: 7.205 ± 3.159
2.161GluPro: 2.161 ± 0.785
3.602GluGln: 3.602 ± 0.572
2.882GluArg: 2.882 ± 1.405
3.602GluSer: 3.602 ± 1.601
4.323GluThr: 4.323 ± 2.025
3.602GluVal: 3.602 ± 1.117
1.441GluTrp: 1.441 ± 0.992
7.925GluTyr: 7.925 ± 0.956
0.0GluXaa: 0.0 ± 0.0
Phe
1.441PheAla: 1.441 ± 0.841
0.72PheCys: 0.72 ± 0.544
2.161PheAsp: 2.161 ± 1.53
3.602PheGlu: 3.602 ± 1.275
1.441PhePhe: 1.441 ± 1.088
4.323PheGly: 4.323 ± 1.073
0.72PheHis: 0.72 ± 0.496
5.043PheIle: 5.043 ± 3.177
5.043PheLys: 5.043 ± 1.426
1.441PheLeu: 1.441 ± 0.992
0.72PheMet: 0.72 ± 0.879
2.161PheAsn: 2.161 ± 1.26
0.0PhePro: 0.0 ± 0.0
0.0PheGln: 0.0 ± 0.0
2.882PheArg: 2.882 ± 0.867
2.882PheSer: 2.882 ± 1.583
5.764PheThr: 5.764 ± 2.205
1.441PheVal: 1.441 ± 0.736
1.441PheTrp: 1.441 ± 0.992
2.161PheTyr: 2.161 ± 0.737
0.0PheXaa: 0.0 ± 0.0
Gly
7.925GlyAla: 7.925 ± 3.927
1.441GlyCys: 1.441 ± 0.909
2.161GlyAsp: 2.161 ± 0.785
3.602GlyGlu: 3.602 ± 1.393
2.882GlyPhe: 2.882 ± 0.982
4.323GlyGly: 4.323 ± 3.487
0.72GlyHis: 0.72 ± 0.967
3.602GlyIle: 3.602 ± 2.542
5.043GlyLys: 5.043 ± 1.196
7.925GlyLeu: 7.925 ± 1.759
0.72GlyMet: 0.72 ± 0.496
2.882GlyAsn: 2.882 ± 1.314
0.72GlyPro: 0.72 ± 0.544
2.161GlyGln: 2.161 ± 0.785
1.441GlyArg: 1.441 ± 1.088
2.882GlySer: 2.882 ± 1.682
8.646GlyThr: 8.646 ± 2.089
4.323GlyVal: 4.323 ± 2.379
0.0GlyTrp: 0.0 ± 0.0
2.161GlyTyr: 2.161 ± 0.649
0.0GlyXaa: 0.0 ± 0.0
His
2.161HisAla: 2.161 ± 1.33
0.0HisCys: 0.0 ± 0.0
1.441HisAsp: 1.441 ± 0.992
1.441HisGlu: 1.441 ± 1.088
0.72HisPhe: 0.72 ± 0.496
0.0HisGly: 0.0 ± 0.0
0.0HisHis: 0.0 ± 0.0
0.72HisIle: 0.72 ± 0.496
0.72HisLys: 0.72 ± 0.496
0.0HisLeu: 0.0 ± 0.0
0.0HisMet: 0.0 ± 0.0
0.72HisAsn: 0.72 ± 0.967
1.441HisPro: 1.441 ± 0.967
0.72HisGln: 0.72 ± 0.967
0.0HisArg: 0.0 ± 0.0
1.441HisSer: 1.441 ± 1.935
0.72HisThr: 0.72 ± 0.496
0.0HisVal: 0.0 ± 0.0
0.0HisTrp: 0.0 ± 0.0
2.882HisTyr: 2.882 ± 0.917
0.0HisXaa: 0.0 ± 0.0
Ile
2.161IleAla: 2.161 ± 0.887
0.0IleCys: 0.0 ± 0.0
7.205IleAsp: 7.205 ± 1.341
5.043IleGlu: 5.043 ± 1.837
3.602IlePhe: 3.602 ± 1.552
4.323IleGly: 4.323 ± 1.382
0.0IleHis: 0.0 ± 0.0
1.441IleIle: 1.441 ± 0.458
8.646IleLys: 8.646 ± 2.453
2.882IleLeu: 2.882 ± 0.853
2.161IleMet: 2.161 ± 2.061
6.484IleAsn: 6.484 ± 2.525
5.043IlePro: 5.043 ± 2.677
2.882IleGln: 2.882 ± 1.818
1.441IleArg: 1.441 ± 0.458
2.161IleSer: 2.161 ± 1.744
4.323IleThr: 4.323 ± 1.765
3.602IleVal: 3.602 ± 1.186
0.72IleTrp: 0.72 ± 0.496
2.161IleTyr: 2.161 ± 0.737
0.0IleXaa: 0.0 ± 0.0
Lys
5.764LysAla: 5.764 ± 4.016
2.161LysCys: 2.161 ± 0.737
1.441LysAsp: 1.441 ± 0.967
8.646LysGlu: 8.646 ± 3.524
6.484LysPhe: 6.484 ± 2.113
5.764LysGly: 5.764 ± 0.922
1.441LysHis: 1.441 ± 0.458
10.086LysIle: 10.086 ± 5.107
8.646LysLys: 8.646 ± 4.519
8.646LysLeu: 8.646 ± 3.341
2.882LysMet: 2.882 ± 1.067
8.646LysAsn: 8.646 ± 3.938
2.882LysPro: 2.882 ± 1.125
1.441LysGln: 1.441 ± 1.101
3.602LysArg: 3.602 ± 1.186
5.043LysSer: 5.043 ± 0.703
11.527LysThr: 11.527 ± 2.941
0.0LysVal: 0.0 ± 0.0
0.0LysTrp: 0.0 ± 0.0
2.161LysTyr: 2.161 ± 1.139
0.0LysXaa: 0.0 ± 0.0
Leu
2.882LeuAla: 2.882 ± 1.985
0.72LeuCys: 0.72 ± 0.544
5.043LeuAsp: 5.043 ± 2.005
5.043LeuGlu: 5.043 ± 2.078
0.72LeuPhe: 0.72 ± 0.967
7.205LeuGly: 7.205 ± 1.291
0.0LeuHis: 0.0 ± 0.0
5.043LeuIle: 5.043 ± 1.002
10.086LeuLys: 10.086 ± 4.636
3.602LeuLeu: 3.602 ± 1.393
0.72LeuMet: 0.72 ± 0.702
5.043LeuAsn: 5.043 ± 2.588
5.764LeuPro: 5.764 ± 0.753
3.602LeuGln: 3.602 ± 0.881
3.602LeuArg: 3.602 ± 1.525
6.484LeuSer: 6.484 ± 1.603
4.323LeuThr: 4.323 ± 1.75
0.72LeuVal: 0.72 ± 0.496
0.0LeuTrp: 0.0 ± 0.0
3.602LeuTyr: 3.602 ± 1.876
0.0LeuXaa: 0.0 ± 0.0
Met
0.0MetAla: 0.0 ± 0.0
0.0MetCys: 0.0 ± 0.0
2.161MetAsp: 2.161 ± 1.744
1.441MetGlu: 1.441 ± 0.458
0.72MetPhe: 0.72 ± 0.544
4.323MetGly: 4.323 ± 1.878
0.72MetHis: 0.72 ± 0.544
1.441MetIle: 1.441 ± 1.403
0.72MetLys: 0.72 ± 0.879
4.323MetLeu: 4.323 ± 0.535
0.0MetMet: 0.0 ± 0.0
0.72MetAsn: 0.72 ± 0.879
1.441MetPro: 1.441 ± 0.992
0.72MetGln: 0.72 ± 0.702
0.72MetArg: 0.72 ± 0.879
2.882MetSer: 2.882 ± 1.231
1.441MetThr: 1.441 ± 0.987
1.441MetVal: 1.441 ± 0.991
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
5.043AsnAla: 5.043 ± 2.221
1.441AsnCys: 1.441 ± 1.088
3.602AsnAsp: 3.602 ± 0.941
2.161AsnGlu: 2.161 ± 0.985
4.323AsnPhe: 4.323 ± 1.375
2.882AsnGly: 2.882 ± 1.682
0.72AsnHis: 0.72 ± 0.544
2.161AsnIle: 2.161 ± 1.349
8.646AsnLys: 8.646 ± 3.891
5.043AsnLeu: 5.043 ± 1.647
0.0AsnMet: 0.0 ± 0.0
7.925AsnAsn: 7.925 ± 2.607
3.602AsnPro: 3.602 ± 2.162
4.323AsnGln: 4.323 ± 0.648
4.323AsnArg: 4.323 ± 1.086
3.602AsnSer: 3.602 ± 1.085
2.161AsnThr: 2.161 ± 0.985
2.161AsnVal: 2.161 ± 1.349
0.72AsnTrp: 0.72 ± 0.496
4.323AsnTyr: 4.323 ± 1.991
0.0AsnXaa: 0.0 ± 0.0
Pro
0.72ProAla: 0.72 ± 0.544
0.72ProCys: 0.72 ± 0.544
0.72ProAsp: 0.72 ± 0.496
2.882ProGlu: 2.882 ± 1.933
2.161ProPhe: 2.161 ± 1.159
2.161ProGly: 2.161 ± 1.488
0.72ProHis: 0.72 ± 0.544
6.484ProIle: 6.484 ± 1.91
0.72ProLys: 0.72 ± 0.544
3.602ProLeu: 3.602 ± 1.206
0.0ProMet: 0.0 ± 0.0
1.441ProAsn: 1.441 ± 0.458
0.0ProPro: 0.0 ± 0.0
2.882ProGln: 2.882 ± 1.231
2.161ProArg: 2.161 ± 0.875
1.441ProSer: 1.441 ± 0.458
2.882ProThr: 2.882 ± 0.867
4.323ProVal: 4.323 ± 2.977
0.0ProTrp: 0.0 ± 0.0
0.0ProTyr: 0.0 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.882GlnAla: 2.882 ± 1.682
0.0GlnCys: 0.0 ± 0.0
0.72GlnAsp: 0.72 ± 0.702
3.602GlnGlu: 3.602 ± 0.941
2.161GlnPhe: 2.161 ± 0.785
1.441GlnGly: 1.441 ± 0.992
0.0GlnHis: 0.0 ± 0.0
2.882GlnIle: 2.882 ± 0.917
5.043GlnLys: 5.043 ± 1.786
1.441GlnLeu: 1.441 ± 0.458
1.441GlnMet: 1.441 ± 0.992
0.72GlnAsn: 0.72 ± 0.544
1.441GlnPro: 1.441 ± 0.992
2.882GlnGln: 2.882 ± 1.704
2.161GlnArg: 2.161 ± 1.26
2.161GlnSer: 2.161 ± 1.04
2.161GlnThr: 2.161 ± 0.985
1.441GlnVal: 1.441 ± 0.841
0.72GlnTrp: 0.72 ± 0.967
0.72GlnTyr: 0.72 ± 0.496
0.0GlnXaa: 0.0 ± 0.0
Arg
3.602ArgAla: 3.602 ± 0.572
0.0ArgCys: 0.0 ± 0.0
1.441ArgAsp: 1.441 ± 0.967
5.043ArgGlu: 5.043 ± 3.103
1.441ArgPhe: 1.441 ± 0.458
2.882ArgGly: 2.882 ± 0.735
0.0ArgHis: 0.0 ± 0.0
2.882ArgIle: 2.882 ± 1.231
3.602ArgLys: 3.602 ± 1.579
3.602ArgLeu: 3.602 ± 1.287
1.441ArgMet: 1.441 ± 0.967
2.161ArgAsn: 2.161 ± 0.785
0.72ArgPro: 0.72 ± 0.544
0.0ArgGln: 0.0 ± 0.0
0.72ArgArg: 0.72 ± 0.496
0.72ArgSer: 0.72 ± 0.496
2.882ArgThr: 2.882 ± 0.853
1.441ArgVal: 1.441 ± 0.458
0.0ArgTrp: 0.0 ± 0.0
2.882ArgTyr: 2.882 ± 0.853
0.0ArgXaa: 0.0 ± 0.0
Ser
5.043SerAla: 5.043 ± 3.39
0.0SerCys: 0.0 ± 0.0
2.882SerAsp: 2.882 ± 1.468
3.602SerGlu: 3.602 ± 0.523
2.882SerPhe: 2.882 ± 1.454
3.602SerGly: 3.602 ± 0.881
0.72SerHis: 0.72 ± 0.967
2.161SerIle: 2.161 ± 0.649
5.764SerLys: 5.764 ± 0.922
3.602SerLeu: 3.602 ± 2.091
2.161SerMet: 2.161 ± 1.159
2.882SerAsn: 2.882 ± 1.314
1.441SerPro: 1.441 ± 0.967
0.72SerGln: 0.72 ± 0.967
2.882SerArg: 2.882 ± 0.853
6.484SerSer: 6.484 ± 3.047
6.484SerThr: 6.484 ± 2.263
2.161SerVal: 2.161 ± 0.785
0.0SerTrp: 0.0 ± 0.0
1.441SerTyr: 1.441 ± 0.991
0.0SerXaa: 0.0 ± 0.0
Thr
8.646ThrAla: 8.646 ± 1.675
0.0ThrCys: 0.0 ± 0.0
3.602ThrAsp: 3.602 ± 2.091
4.323ThrGlu: 4.323 ± 1.928
2.882ThrPhe: 2.882 ± 0.917
6.484ThrGly: 6.484 ± 2.27
2.161ThrHis: 2.161 ± 1.159
6.484ThrIle: 6.484 ± 0.778
6.484ThrLys: 6.484 ± 0.934
5.043ThrLeu: 5.043 ± 1.821
0.72ThrMet: 0.72 ± 0.496
6.484ThrAsn: 6.484 ± 2.479
2.882ThrPro: 2.882 ± 1.985
2.161ThrGln: 2.161 ± 1.488
2.161ThrArg: 2.161 ± 0.785
6.484ThrSer: 6.484 ± 2.405
3.602ThrThr: 3.602 ± 1.763
2.161ThrVal: 2.161 ± 0.649
1.441ThrTrp: 1.441 ± 0.458
5.043ThrTyr: 5.043 ± 1.761
0.0ThrXaa: 0.0 ± 0.0
Val
2.882ValAla: 2.882 ± 1.454
2.882ValCys: 2.882 ± 1.231
0.0ValAsp: 0.0 ± 0.0
2.161ValGlu: 2.161 ± 0.887
0.0ValPhe: 0.0 ± 0.0
0.72ValGly: 0.72 ± 0.544
0.0ValHis: 0.0 ± 0.0
1.441ValIle: 1.441 ± 0.992
2.882ValLys: 2.882 ± 1.125
2.161ValLeu: 2.161 ± 0.985
2.161ValMet: 2.161 ± 0.785
2.161ValAsn: 2.161 ± 0.887
2.161ValPro: 2.161 ± 0.785
1.441ValGln: 1.441 ± 0.458
1.441ValArg: 1.441 ± 0.736
3.602ValSer: 3.602 ± 1.725
3.602ValThr: 3.602 ± 2.481
0.0ValVal: 0.0 ± 0.0
0.72ValTrp: 0.72 ± 0.496
1.441ValTyr: 1.441 ± 0.736
0.0ValXaa: 0.0 ± 0.0
Trp
1.441TrpAla: 1.441 ± 0.458
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
1.441TrpGlu: 1.441 ± 0.841
0.72TrpPhe: 0.72 ± 0.496
0.72TrpGly: 0.72 ± 0.544
0.72TrpHis: 0.72 ± 0.496
0.72TrpIle: 0.72 ± 0.496
0.72TrpLys: 0.72 ± 0.544
0.72TrpLeu: 0.72 ± 0.544
0.0TrpMet: 0.0 ± 0.0
0.72TrpAsn: 0.72 ± 0.496
0.0TrpPro: 0.0 ± 0.0
1.441TrpGln: 1.441 ± 0.992
0.0TrpArg: 0.0 ± 0.0
0.72TrpSer: 0.72 ± 0.496
0.72TrpThr: 0.72 ± 0.496
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.72TrpTyr: 0.72 ± 0.496
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.882TyrAla: 2.882 ± 1.234
0.0TyrCys: 0.0 ± 0.0
2.161TyrAsp: 2.161 ± 1.809
4.323TyrGlu: 4.323 ± 1.604
2.882TyrPhe: 2.882 ± 0.917
5.764TyrGly: 5.764 ± 0.753
2.161TyrHis: 2.161 ± 0.897
4.323TyrIle: 4.323 ± 2.379
3.602TyrLys: 3.602 ± 1.369
4.323TyrLeu: 4.323 ± 1.375
2.882TyrMet: 2.882 ± 1.498
2.882TyrAsn: 2.882 ± 1.383
1.441TyrPro: 1.441 ± 0.736
1.441TyrGln: 1.441 ± 0.841
0.0TyrArg: 0.0 ± 0.0
0.72TyrSer: 0.72 ± 0.967
1.441TyrThr: 1.441 ± 0.458
1.441TyrVal: 1.441 ± 0.458
1.441TyrTrp: 1.441 ± 0.458
0.72TyrTyr: 0.72 ± 0.496
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 5 proteins (1389 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski