Carnation etched ring virus (CERV)

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Caulimovirus

Average proteome isoelectric point is 7.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|P05399|CAPSD_CERV Probable capsid protein OS=Carnation etched ring virus OX=10640 GN=ORF IV PE=3 SV=1
MM1 pKa = 7.37NLATIASEE9 pKa = 4.07IEE11 pKa = 4.3VVKK14 pKa = 10.08TNQKK18 pKa = 9.26TIEE21 pKa = 4.19SKK23 pKa = 10.25IDD25 pKa = 3.33QILAKK30 pKa = 10.16IGSTPDD36 pKa = 2.97EE37 pKa = 4.49SSNLEE42 pKa = 3.89SVAAKK47 pKa = 10.14IISDD51 pKa = 3.52LTKK54 pKa = 10.64EE55 pKa = 4.13MKK57 pKa = 9.81EE58 pKa = 3.94CHH60 pKa = 6.23CNKK63 pKa = 10.26EE64 pKa = 3.84IVEE67 pKa = 4.29ILNKK71 pKa = 10.27DD72 pKa = 3.3KK73 pKa = 11.27AIIPSPEE80 pKa = 3.44QDD82 pKa = 3.62SIQKK86 pKa = 10.22RR87 pKa = 11.84LSEE90 pKa = 3.98PQYY93 pKa = 9.58TFPNFDD99 pKa = 3.32VGNEE103 pKa = 3.97GMGSSTNPNALKK115 pKa = 10.03WPPTEE120 pKa = 5.67KK121 pKa = 10.11PQPWPPRR128 pKa = 3.54

Molecular weight: 14.23 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|P05398|VAP_CERV Virion-associated protein OS=Carnation etched ring virus OX=10640 GN=ORF III PE=3 SV=1
MM1 pKa = 7.54SLTTYY6 pKa = 8.85PHH8 pKa = 7.01IYY10 pKa = 10.05KK11 pKa = 10.16KK12 pKa = 10.15EE13 pKa = 3.89QILKK17 pKa = 10.42LKK19 pKa = 10.43RR20 pKa = 11.84LNKK23 pKa = 10.09LSNDD27 pKa = 2.92RR28 pKa = 11.84KK29 pKa = 10.44FFFSSVKK36 pKa = 9.17GTLPGIISHH45 pKa = 6.74CNNINEE51 pKa = 4.29ILGRR55 pKa = 11.84CYY57 pKa = 10.7LGICKK62 pKa = 10.2LNSFFGLSKK71 pKa = 10.97DD72 pKa = 3.69PSDD75 pKa = 3.72KK76 pKa = 11.1LSVSKK81 pKa = 11.0SPSVYY86 pKa = 9.78TLPSKK91 pKa = 10.4IFKK94 pKa = 10.33EE95 pKa = 4.46GGGNGDD101 pKa = 3.38NTTTQTDD108 pKa = 3.48ILKK111 pKa = 10.04NAQDD115 pKa = 3.64QVILSKK121 pKa = 10.88KK122 pKa = 9.36IDD124 pKa = 3.65EE125 pKa = 4.88LQTQVKK131 pKa = 8.76EE132 pKa = 4.11LSSKK136 pKa = 10.41IEE138 pKa = 3.98PEE140 pKa = 4.03PLTKK144 pKa = 10.39EE145 pKa = 4.45DD146 pKa = 3.05IKK148 pKa = 10.74KK149 pKa = 9.04TYY151 pKa = 7.29EE152 pKa = 3.76TLSRR156 pKa = 11.84IEE158 pKa = 4.48SGLKK162 pKa = 10.31GIIGIEE168 pKa = 3.85

Molecular weight: 18.8 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2264

128

659

377.3

43.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.196 ± 0.362

1.723 ± 0.364

4.947 ± 0.472

8.348 ± 0.883

4.417 ± 0.451

4.373 ± 0.345

1.943 ± 0.467

7.818 ± 0.538

11.042 ± 0.325

8.701 ± 0.574

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.502 ± 0.137

5.919 ± 0.444

4.859 ± 0.459

3.931 ± 0.252

3.534 ± 0.306

9.231 ± 0.687

4.549 ± 0.469

4.196 ± 0.269

0.883 ± 0.189

3.887 ± 0.375
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski