Papio hamadryas papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 12

Average proteome isoelectric point is 6.87

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|H9LC16|H9LC16_RHPV1 Minor capsid protein L2 OS=Papio hamadryas papillomavirus 1 OX=990303 GN=L2 PE=3 SV=1
MM1 pKa = 7.61IGPHH5 pKa = 6.35PTLADD10 pKa = 2.76IVLEE14 pKa = 4.23LEE16 pKa = 4.49PEE18 pKa = 4.28PVDD21 pKa = 3.87LRR23 pKa = 11.84CYY25 pKa = 9.54EE26 pKa = 4.08QLDD29 pKa = 3.85SSDD32 pKa = 5.12DD33 pKa = 3.59EE34 pKa = 5.69DD35 pKa = 5.97EE36 pKa = 4.73IDD38 pKa = 4.04HH39 pKa = 6.4HH40 pKa = 5.56QQQARR45 pKa = 11.84PVHH48 pKa = 6.25QEE50 pKa = 3.41DD51 pKa = 4.95GEE53 pKa = 4.47CFRR56 pKa = 11.84ILSDD60 pKa = 4.21CHH62 pKa = 6.59ICQNTVSLVVYY73 pKa = 8.41STHH76 pKa = 7.94DD77 pKa = 3.75DD78 pKa = 3.66LHH80 pKa = 7.71VLEE83 pKa = 5.51DD84 pKa = 3.95LLMGNLEE91 pKa = 4.23IVCPNCAII99 pKa = 4.03

Molecular weight: 11.23 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H9LC15|H9LC15_RHPV1 Protein E7 OS=Papio hamadryas papillomavirus 1 OX=990303 GN=E7 PE=3 SV=1
AA1 pKa = 7.82CKK3 pKa = 9.1TATILLFVVVFLLLFLLGLVACVRR27 pKa = 11.84VSALLLCLHH36 pKa = 7.12IYY38 pKa = 10.72AHH40 pKa = 6.34VLLLMLLFWVTITSPAAAFALCVGCFLCPLFFIHH74 pKa = 6.79LHH76 pKa = 5.68ALSVVYY82 pKa = 10.74SRR84 pKa = 11.84MEE86 pKa = 3.57

Molecular weight: 9.51 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2398

86

629

299.8

33.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.006 ± 0.458

2.877 ± 0.584

5.796 ± 0.591

5.213 ± 0.676

3.545 ± 0.497

7.214 ± 0.576

3.294 ± 0.419

3.962 ± 0.475

4.42 ± 0.874

9.091 ± 0.861

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.668 ± 0.291

3.253 ± 0.668

6.672 ± 1.36

4.17 ± 0.416

5.88 ± 0.671

6.797 ± 0.47

6.631 ± 0.836

7.214 ± 0.393

1.543 ± 0.425

3.753 ± 0.393
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski