Salmonella phage TS6

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Cornellvirus; unclassified Cornellvirus

Average proteome isoelectric point is 6.24

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 65 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5S9BG12|A0A5S9BG12_9CAUD Uncharacterized protein OS=Salmonella phage TS6 OX=2491323 GN=AP6_009 PE=4 SV=1
MM1 pKa = 7.26AQYY4 pKa = 9.0EE5 pKa = 4.41IPDD8 pKa = 4.16CNDD11 pKa = 3.99PEE13 pKa = 4.49WQSQMLRR20 pKa = 11.84EE21 pKa = 4.22LEE23 pKa = 4.39EE24 pKa = 4.01NLQLLRR30 pKa = 11.84DD31 pKa = 5.06DD32 pKa = 5.39IGDD35 pKa = 4.28DD36 pKa = 3.74NPNLVDD42 pKa = 3.67SLSIVDD48 pKa = 4.87ALRR51 pKa = 11.84QYY53 pKa = 11.13SGYY56 pKa = 11.21

Molecular weight: 6.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5S9H9K4|A0A5S9H9K4_9CAUD Uncharacterized protein OS=Salmonella phage TS6 OX=2491323 GN=AP6_025 PE=4 SV=1
MM1 pKa = 7.52SLATDD6 pKa = 3.38ILKK9 pKa = 10.37RR10 pKa = 11.84ANSDD14 pKa = 3.34LSPPSKK20 pKa = 10.44SIRR23 pKa = 11.84ADD25 pKa = 3.31YY26 pKa = 9.1MGPAIRR32 pKa = 11.84KK33 pKa = 6.74KK34 pKa = 10.59AKK36 pKa = 9.47RR37 pKa = 11.84AAPKK41 pKa = 10.45GPRR44 pKa = 11.84LNRR47 pKa = 11.84KK48 pKa = 8.83KK49 pKa = 10.79GKK51 pKa = 6.76TVNYY55 pKa = 8.1VAPKK59 pKa = 8.35HH60 pKa = 4.95EE61 pKa = 4.5HH62 pKa = 4.99VAGVAFNSRR71 pKa = 11.84NNTWDD76 pKa = 3.03AYY78 pKa = 10.53FYY80 pKa = 11.24DD81 pKa = 4.9GIKK84 pKa = 9.55TIRR87 pKa = 11.84IGMFHH92 pKa = 5.71TQARR96 pKa = 11.84ALIARR101 pKa = 11.84RR102 pKa = 11.84IYY104 pKa = 9.73MYY106 pKa = 9.49WRR108 pKa = 11.84KK109 pKa = 10.11CGFDD113 pKa = 3.89NIPNKK118 pKa = 9.56PEE120 pKa = 3.47RR121 pKa = 11.84RR122 pKa = 11.84LYY124 pKa = 10.15TMRR127 pKa = 11.84NYY129 pKa = 10.69SDD131 pKa = 3.46KK132 pKa = 11.39SS133 pKa = 3.41

Molecular weight: 15.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

65

0

65

12657

39

852

194.7

21.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.105 ± 0.461

1.146 ± 0.134

6.384 ± 0.276

6.415 ± 0.333

3.437 ± 0.18

7.632 ± 0.377

1.691 ± 0.181

5.143 ± 0.192

5.862 ± 0.306

7.806 ± 0.308

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.457 ± 0.152

4.756 ± 0.254

3.903 ± 0.21

4.18 ± 0.322

5.333 ± 0.235

5.87 ± 0.303

6.17 ± 0.318

6.992 ± 0.315

1.406 ± 0.143

3.31 ± 0.187
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski