Oceanicoccus sagamiensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales; Spongiibacteraceae; Oceanicoccus

Average proteome isoelectric point is 5.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3870 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1X9NII4|A0A1X9NII4_9GAMM STN domain-containing protein OS=Oceanicoccus sagamiensis OX=716816 GN=BST96_06500 PE=3 SV=1
MM1 pKa = 7.3TSNPILLAAFSLALAQPALSQVNMALLGDD30 pKa = 4.62SIIDD34 pKa = 4.16DD35 pKa = 3.88YY36 pKa = 11.65LGPSNSIGTNTNLAAGSFGQILADD60 pKa = 3.73TRR62 pKa = 11.84GADD65 pKa = 3.52INFGAYY71 pKa = 8.51KK72 pKa = 10.64APTANTADD80 pKa = 3.28AWDD83 pKa = 4.11SIRR86 pKa = 11.84NFGYY90 pKa = 10.05EE91 pKa = 4.36YY92 pKa = 11.14NWATAGGTASAQEE105 pKa = 4.29LNLDD109 pKa = 4.02FNGPDD114 pKa = 3.23APGYY118 pKa = 9.49AQIPIASNLAAQVAGLAPSISSGDD142 pKa = 3.0VDD144 pKa = 3.63TAVISVGPNDD154 pKa = 4.02FFYY157 pKa = 10.99HH158 pKa = 5.98SLVIDD163 pKa = 3.72TASGGFYY170 pKa = 9.43PAPDD174 pKa = 3.7GQLDD178 pKa = 3.53QTFTNLVADD187 pKa = 5.14SILEE191 pKa = 4.85GIDD194 pKa = 3.2TLQAAGDD201 pKa = 3.6VDD203 pKa = 4.73IILGLLAKK211 pKa = 10.37RR212 pKa = 11.84PGLSEE217 pKa = 4.28EE218 pKa = 4.31EE219 pKa = 3.89NTAIDD224 pKa = 3.85TVNNRR229 pKa = 11.84LLTEE233 pKa = 4.05ATEE236 pKa = 4.19KK237 pKa = 11.02GVVVLDD243 pKa = 3.88FMEE246 pKa = 4.21WTISGEE252 pKa = 4.15NVDD255 pKa = 5.88PITQDD260 pKa = 3.05VTIGDD265 pKa = 3.84VVVEE269 pKa = 4.15YY270 pKa = 11.06GSVASISDD278 pKa = 3.48MSTEE282 pKa = 4.2GDD284 pKa = 3.53GAYY287 pKa = 8.29CTYY290 pKa = 10.97EE291 pKa = 4.12GLCPLDD297 pKa = 3.35SHH299 pKa = 6.69AFSYY303 pKa = 10.47LAEE306 pKa = 5.25DD307 pKa = 3.95GRR309 pKa = 11.84HH310 pKa = 6.15LNTLMQGMLANEE322 pKa = 4.7ILTAMNTHH330 pKa = 6.91FDD332 pKa = 3.43HH333 pKa = 7.98DD334 pKa = 4.19IDD336 pKa = 4.54LLSDD340 pKa = 3.85SEE342 pKa = 4.41LLGLVGVSEE351 pKa = 4.74VPVPAAAWLFMSALLGLVGIKK372 pKa = 9.89RR373 pKa = 11.84RR374 pKa = 11.84NN375 pKa = 3.13

Molecular weight: 39.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1X9NGP8|A0A1X9NGP8_9GAMM Selenide water dikinase SelD OS=Oceanicoccus sagamiensis OX=716816 GN=BST96_20065 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.49RR12 pKa = 11.84KK13 pKa = 7.97RR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.43NGRR28 pKa = 11.84ALINRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.77GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3870

0

3870

1275952

25

14664

329.7

36.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.43 ± 0.048

0.965 ± 0.017

6.162 ± 0.068

6.139 ± 0.044

3.891 ± 0.028

7.326 ± 0.065

2.007 ± 0.026

6.225 ± 0.035

4.517 ± 0.053

10.04 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.516 ± 0.027

4.114 ± 0.047

4.175 ± 0.038

4.571 ± 0.039

4.627 ± 0.05

6.679 ± 0.039

5.445 ± 0.063

6.839 ± 0.036

1.245 ± 0.018

3.086 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski