Capybara microvirus Cap3_SP_410

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W4R3|A0A4P8W4R3_9VIRU Replication initiator protein OS=Capybara microvirus Cap3_SP_410 OX=2585446 PE=4 SV=1
MM1 pKa = 7.68AKK3 pKa = 10.58LNIFGFNQDD12 pKa = 3.8AVPLEE17 pKa = 4.46DD18 pKa = 5.21DD19 pKa = 4.28KK20 pKa = 11.8LPHH23 pKa = 7.09RR24 pKa = 11.84ISQVFFDD31 pKa = 4.06EE32 pKa = 4.59EE33 pKa = 3.88QDD35 pKa = 3.28KK36 pKa = 10.86FIPFKK41 pKa = 10.85DD42 pKa = 3.32NPRR45 pKa = 11.84FVSASAVDD53 pKa = 4.39LPSLLAAGIQPGEE66 pKa = 3.88AHH68 pKa = 6.11QEE70 pKa = 3.62ISSLSFVADD79 pKa = 4.55FNRR82 pKa = 11.84SLSSFPQIDD91 pKa = 3.55NQTSNKK97 pKa = 9.59SS98 pKa = 3.19

Molecular weight: 10.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W4Y2|A0A4P8W4Y2_9VIRU Minor capsid protein OS=Capybara microvirus Cap3_SP_410 OX=2585446 PE=4 SV=1
MM1 pKa = 7.41KK2 pKa = 10.36VLNNSCYY9 pKa = 10.04FSPVNYY15 pKa = 9.64RR16 pKa = 11.84KK17 pKa = 10.56YY18 pKa = 11.11NFLPYY23 pKa = 10.12SSNYY27 pKa = 10.48SYY29 pKa = 11.5DD30 pKa = 3.4LSKK33 pKa = 11.06SLSYY37 pKa = 10.72LVRR40 pKa = 11.84CYY42 pKa = 9.98YY43 pKa = 7.96QWKK46 pKa = 10.41YY47 pKa = 11.03SVEE50 pKa = 4.18LCNGHH55 pKa = 6.65CFLFMLTYY63 pKa = 10.78NDD65 pKa = 3.49NNLPLFDD72 pKa = 5.97DD73 pKa = 5.26FFPCHH78 pKa = 6.19SSKK81 pKa = 10.93DD82 pKa = 3.17IRR84 pKa = 11.84DD85 pKa = 3.42FTKK88 pKa = 10.56RR89 pKa = 11.84LNYY92 pKa = 9.6YY93 pKa = 9.35IKK95 pKa = 10.59SKK97 pKa = 10.46SASFEE102 pKa = 3.5WSYY105 pKa = 11.5FCSKK109 pKa = 10.68EE110 pKa = 3.9FGEE113 pKa = 4.43KK114 pKa = 8.9TKK116 pKa = 10.64RR117 pKa = 11.84PHH119 pKa = 4.79YY120 pKa = 10.43HH121 pKa = 6.44FLLFTDD127 pKa = 5.11FNEE130 pKa = 4.56SVDD133 pKa = 4.17EE134 pKa = 4.06ICRR137 pKa = 11.84LVNLAWITRR146 pKa = 11.84DD147 pKa = 3.14GSKK150 pKa = 10.91GGFVSVSPKK159 pKa = 10.13HH160 pKa = 5.0GAEE163 pKa = 3.71IKK165 pKa = 10.91SFGALKK171 pKa = 10.49YY172 pKa = 9.66VIKK175 pKa = 10.79YY176 pKa = 8.85VIKK179 pKa = 9.66DD180 pKa = 3.29TSTRR184 pKa = 11.84KK185 pKa = 10.36YY186 pKa = 10.5YY187 pKa = 10.85DD188 pKa = 5.04DD189 pKa = 4.6IYY191 pKa = 10.85QHH193 pKa = 7.94IYY195 pKa = 9.36MNNEE199 pKa = 3.36TSFDD203 pKa = 3.48VDD205 pKa = 4.1LDD207 pKa = 3.72MQIYY211 pKa = 9.92YY212 pKa = 10.69YY213 pKa = 11.13NNHH216 pKa = 6.44CNNNNIVDD224 pKa = 3.71NGTIDD229 pKa = 3.9FLCEE233 pKa = 3.38ISKK236 pKa = 11.05SKK238 pKa = 10.57GFQKK242 pKa = 10.47FRR244 pKa = 11.84DD245 pKa = 3.93AYY247 pKa = 9.64ISSKK251 pKa = 9.58TDD253 pKa = 2.61SDD255 pKa = 3.51FRR257 pKa = 11.84QWKK260 pKa = 8.92NEE262 pKa = 4.12CGVKK266 pKa = 9.63PQYY269 pKa = 10.71SKK271 pKa = 11.4RR272 pKa = 11.84LGNFALQHH280 pKa = 6.09ISNNTIKK287 pKa = 10.6IPDD290 pKa = 3.74GEE292 pKa = 4.15NFKK295 pKa = 10.78FVNIPLYY302 pKa = 10.46LYY304 pKa = 10.36RR305 pKa = 11.84KK306 pKa = 9.83LYY308 pKa = 10.51YY309 pKa = 10.64NYY311 pKa = 10.28FQDD314 pKa = 3.81GEE316 pKa = 4.59KK317 pKa = 10.36NVHH320 pKa = 5.74YY321 pKa = 9.75FLNEE325 pKa = 3.55HH326 pKa = 6.04GVALKK331 pKa = 10.29YY332 pKa = 10.62KK333 pKa = 9.88QFNSHH338 pKa = 6.14ICNDD342 pKa = 2.84VCFNYY347 pKa = 10.74DD348 pKa = 4.43LIRR351 pKa = 11.84SSEE354 pKa = 3.82YY355 pKa = 11.38SNILKK360 pKa = 10.59GDD362 pKa = 4.05FSQSYY367 pKa = 10.57DD368 pKa = 3.59FIYY371 pKa = 10.85RR372 pKa = 11.84LTLYY376 pKa = 10.68NSLYY380 pKa = 10.31RR381 pKa = 11.84DD382 pKa = 3.81RR383 pKa = 11.84FCPNLEE389 pKa = 5.11DD390 pKa = 4.02YY391 pKa = 11.41VCDD394 pKa = 3.92IDD396 pKa = 4.68PKK398 pKa = 11.09KK399 pKa = 10.99DD400 pKa = 3.94FIKK403 pKa = 10.88FNTHH407 pKa = 7.32AIFHH411 pKa = 6.27PEE413 pKa = 3.68CHH415 pKa = 6.75DD416 pKa = 3.79FSSLSSSQKK425 pKa = 10.61YY426 pKa = 9.85NLITNFYY433 pKa = 6.92QHH435 pKa = 7.09KK436 pKa = 8.92FSTYY440 pKa = 8.48NNHH443 pKa = 7.02PYY445 pKa = 10.15FEE447 pKa = 4.49EE448 pKa = 4.11VSKK451 pKa = 11.25YY452 pKa = 11.29SNLLYY457 pKa = 10.74DD458 pKa = 4.18LTYY461 pKa = 10.58QYY463 pKa = 11.58YY464 pKa = 10.76FNLFKK469 pKa = 10.76NAQQSYY475 pKa = 9.42DD476 pKa = 3.35FVRR479 pKa = 11.84RR480 pKa = 11.84TRR482 pKa = 11.84QQYY485 pKa = 9.84YY486 pKa = 10.75GEE488 pKa = 4.27TT489 pKa = 3.59

Molecular weight: 58.83 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1575

98

617

393.8

45.51

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.46 ± 2.056

1.778 ± 0.649

6.476 ± 0.501

4.762 ± 1.016

6.349 ± 1.199

4.635 ± 0.668

2.286 ± 0.47

5.397 ± 0.602

5.714 ± 0.912

8.19 ± 0.342

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.587 ± 0.342

8.127 ± 1.161

3.302 ± 0.753

5.524 ± 0.81

3.937 ± 0.09

9.016 ± 0.778

4.063 ± 0.696

5.397 ± 0.741

1.079 ± 0.182

6.921 ± 1.873
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski