Corynebacterium kutscheri

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2047 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F6R2H8|A0A0F6R2H8_9CORY Transcriptional regulator OS=Corynebacterium kutscheri OX=35755 GN=UL82_07535 PE=4 SV=1
MM1 pKa = 7.56SLPEE5 pKa = 3.97NFSYY9 pKa = 10.78SEE11 pKa = 3.7EE12 pKa = 4.34HH13 pKa = 5.73EE14 pKa = 4.8WINSTADD21 pKa = 3.3AAVGTTVKK29 pKa = 10.89VGITSIAADD38 pKa = 3.64RR39 pKa = 11.84LGEE42 pKa = 4.26VVFAEE47 pKa = 4.81LPQVGDD53 pKa = 3.82SIEE56 pKa = 4.35AGEE59 pKa = 4.36TCGEE63 pKa = 4.19VEE65 pKa = 4.36STKK68 pKa = 10.75SVSDD72 pKa = 3.74LYY74 pKa = 11.51APVTGTVIAVNDD86 pKa = 4.2AVHH89 pKa = 7.42DD90 pKa = 4.55DD91 pKa = 3.67YY92 pKa = 11.9AIINNDD98 pKa = 3.16PFGQGWLFEE107 pKa = 4.47VEE109 pKa = 4.17VEE111 pKa = 4.96SIGEE115 pKa = 4.06LLTAEE120 pKa = 4.89EE121 pKa = 4.33YY122 pKa = 11.19GKK124 pKa = 11.14ANGVV128 pKa = 3.29

Molecular weight: 13.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F6TC53|A0A0F6TC53_9CORY Dihydrolipoyl dehydrogenase OS=Corynebacterium kutscheri OX=35755 GN=lpd PE=3 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84AKK17 pKa = 10.01KK18 pKa = 8.51HH19 pKa = 4.28GFRR22 pKa = 11.84IRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AIVAARR37 pKa = 11.84RR38 pKa = 11.84SKK40 pKa = 10.76GRR42 pKa = 11.84AKK44 pKa = 9.67LTAA47 pKa = 4.21

Molecular weight: 5.43 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2047

0

2047

665480

17

2988

325.1

35.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.589 ± 0.059

0.787 ± 0.015

5.545 ± 0.051

6.026 ± 0.052

3.555 ± 0.035

7.623 ± 0.048

2.3 ± 0.028

6.43 ± 0.042

3.763 ± 0.051

9.725 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.185 ± 0.025

3.394 ± 0.035

4.631 ± 0.037

3.725 ± 0.032

5.486 ± 0.052

6.257 ± 0.041

6.5 ± 0.057

7.69 ± 0.049

1.311 ± 0.027

2.479 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski