Amino acid dipepetide frequency for Alloprevotella tannerae ATCC 51259

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
7.841AlaAla: 7.841 ± 0.161
1.118AlaCys: 1.118 ± 0.038
4.894AlaAsp: 4.894 ± 0.094
5.145AlaGlu: 5.145 ± 0.102
3.84AlaPhe: 3.84 ± 0.077
5.341AlaGly: 5.341 ± 0.107
1.605AlaHis: 1.605 ± 0.046
4.689AlaIle: 4.689 ± 0.089
4.63AlaLys: 4.63 ± 0.083
8.289AlaLeu: 8.289 ± 0.138
1.976AlaMet: 1.976 ± 0.053
3.293AlaAsn: 3.293 ± 0.07
2.942AlaPro: 2.942 ± 0.075
3.562AlaGln: 3.562 ± 0.079
3.9AlaArg: 3.9 ± 0.092
4.155AlaSer: 4.155 ± 0.072
4.464AlaThr: 4.464 ± 0.094
4.981AlaVal: 4.981 ± 0.095
0.786AlaTrp: 0.786 ± 0.033
3.167AlaTyr: 3.167 ± 0.073
0.0AlaXaa: 0.0 ± 0.0
Cys
1.021CysAla: 1.021 ± 0.042
0.312CysCys: 0.312 ± 0.022
0.685CysAsp: 0.685 ± 0.029
0.707CysGlu: 0.707 ± 0.033
0.776CysPhe: 0.776 ± 0.031
1.214CysGly: 1.214 ± 0.044
0.301CysHis: 0.301 ± 0.023
0.886CysIle: 0.886 ± 0.037
0.719CysLys: 0.719 ± 0.033
1.395CysLeu: 1.395 ± 0.042
0.281CysMet: 0.281 ± 0.018
0.553CysAsn: 0.553 ± 0.028
0.547CysPro: 0.547 ± 0.03
0.392CysGln: 0.392 ± 0.024
0.944CysArg: 0.944 ± 0.037
0.808CysSer: 0.808 ± 0.033
0.732CysThr: 0.732 ± 0.036
0.823CysVal: 0.823 ± 0.032
0.173CysTrp: 0.173 ± 0.016
0.577CysTyr: 0.577 ± 0.028
0.0CysXaa: 0.0 ± 0.0
Asp
4.258AspAla: 4.258 ± 0.077
0.725AspCys: 0.725 ± 0.037
2.747AspAsp: 2.747 ± 0.067
3.658AspGlu: 3.658 ± 0.079
3.152AspPhe: 3.152 ± 0.069
4.021AspGly: 4.021 ± 0.086
1.021AspHis: 1.021 ± 0.038
3.506AspIle: 3.506 ± 0.084
3.552AspLys: 3.552 ± 0.064
5.073AspLeu: 5.073 ± 0.097
1.288AspMet: 1.288 ± 0.046
2.59AspAsn: 2.59 ± 0.056
1.885AspPro: 1.885 ± 0.059
1.478AspGln: 1.478 ± 0.049
2.676AspArg: 2.676 ± 0.056
2.819AspSer: 2.819 ± 0.056
2.646AspThr: 2.646 ± 0.061
3.492AspVal: 3.492 ± 0.078
0.775AspTrp: 0.775 ± 0.032
2.611AspTyr: 2.611 ± 0.066
0.0AspXaa: 0.0 ± 0.0
Glu
5.588GluAla: 5.588 ± 0.098
0.538GluCys: 0.538 ± 0.029
3.241GluAsp: 3.241 ± 0.068
4.625GluGlu: 4.625 ± 0.102
2.013GluPhe: 2.013 ± 0.057
4.034GluGly: 4.034 ± 0.081
1.217GluHis: 1.217 ± 0.041
4.001GluIle: 4.001 ± 0.081
4.686GluLys: 4.686 ± 0.092
5.349GluLeu: 5.349 ± 0.09
1.723GluMet: 1.723 ± 0.044
2.887GluAsn: 2.887 ± 0.06
1.589GluPro: 1.589 ± 0.045
2.859GluGln: 2.859 ± 0.065
3.816GluArg: 3.816 ± 0.084
2.777GluSer: 2.777 ± 0.059
3.271GluThr: 3.271 ± 0.078
3.892GluVal: 3.892 ± 0.079
0.609GluTrp: 0.609 ± 0.029
1.977GluTyr: 1.977 ± 0.047
0.0GluXaa: 0.0 ± 0.0
Phe
3.587PheAla: 3.587 ± 0.082
0.929PheCys: 0.929 ± 0.039
2.772PheAsp: 2.772 ± 0.065
2.405PheGlu: 2.405 ± 0.063
2.488PhePhe: 2.488 ± 0.068
3.307PheGly: 3.307 ± 0.074
0.938PheHis: 0.938 ± 0.039
3.034PheIle: 3.034 ± 0.072
2.381PheLys: 2.381 ± 0.059
4.346PheLeu: 4.346 ± 0.095
1.147PheMet: 1.147 ± 0.037
2.13PheAsn: 2.13 ± 0.06
1.815PhePro: 1.815 ± 0.045
1.334PheGln: 1.334 ± 0.043
2.515PheArg: 2.515 ± 0.057
3.738PheSer: 3.738 ± 0.071
2.771PheThr: 2.771 ± 0.064
2.934PheVal: 2.934 ± 0.072
0.501PheTrp: 0.501 ± 0.026
1.982PheTyr: 1.982 ± 0.056
0.0PheXaa: 0.0 ± 0.0
Gly
4.911GlyAla: 4.911 ± 0.1
0.93GlyCys: 0.93 ± 0.036
3.353GlyAsp: 3.353 ± 0.07
4.1GlyGlu: 4.1 ± 0.076
3.083GlyPhe: 3.083 ± 0.071
4.699GlyGly: 4.699 ± 0.112
1.281GlyHis: 1.281 ± 0.04
4.499GlyIle: 4.499 ± 0.077
5.035GlyLys: 5.035 ± 0.076
6.462GlyLeu: 6.462 ± 0.116
1.65GlyMet: 1.65 ± 0.055
2.957GlyAsn: 2.957 ± 0.06
1.419GlyPro: 1.419 ± 0.044
2.21GlyGln: 2.21 ± 0.058
3.919GlyArg: 3.919 ± 0.086
3.821GlySer: 3.821 ± 0.079
3.666GlyThr: 3.666 ± 0.069
4.551GlyVal: 4.551 ± 0.09
0.908GlyTrp: 0.908 ± 0.036
2.839GlyTyr: 2.839 ± 0.07
0.0GlyXaa: 0.0 ± 0.0
His
1.289HisAla: 1.289 ± 0.042
0.373HisCys: 0.373 ± 0.024
0.96HisAsp: 0.96 ± 0.032
0.995HisGlu: 0.995 ± 0.032
1.253HisPhe: 1.253 ± 0.048
1.092HisGly: 1.092 ± 0.043
0.621HisHis: 0.621 ± 0.029
1.472HisIle: 1.472 ± 0.049
1.237HisLys: 1.237 ± 0.041
2.198HisLeu: 2.198 ± 0.065
0.313HisMet: 0.313 ± 0.021
0.961HisAsn: 0.961 ± 0.036
1.061HisPro: 1.061 ± 0.038
0.794HisGln: 0.794 ± 0.033
1.181HisArg: 1.181 ± 0.044
1.143HisSer: 1.143 ± 0.043
1.231HisThr: 1.231 ± 0.044
1.007HisVal: 1.007 ± 0.036
0.217HisTrp: 0.217 ± 0.018
1.055HisTyr: 1.055 ± 0.037
0.0HisXaa: 0.0 ± 0.0
Ile
5.243IleAla: 5.243 ± 0.086
0.925IleCys: 0.925 ± 0.034
4.109IleAsp: 4.109 ± 0.075
4.112IleGlu: 4.112 ± 0.076
2.708IlePhe: 2.708 ± 0.07
4.153IleGly: 4.153 ± 0.09
1.234IleHis: 1.234 ± 0.045
4.199IleIle: 4.199 ± 0.106
3.974IleLys: 3.974 ± 0.081
5.561IleLeu: 5.561 ± 0.103
1.361IleMet: 1.361 ± 0.044
3.08IleAsn: 3.08 ± 0.063
2.708IlePro: 2.708 ± 0.067
1.894IleGln: 1.894 ± 0.049
3.389IleArg: 3.389 ± 0.07
4.169IleSer: 4.169 ± 0.079
3.674IleThr: 3.674 ± 0.084
4.417IleVal: 4.417 ± 0.084
0.506IleTrp: 0.506 ± 0.03
2.532IleTyr: 2.532 ± 0.064
0.0IleXaa: 0.0 ± 0.0
Lys
5.489LysAla: 5.489 ± 0.1
0.57LysCys: 0.57 ± 0.028
3.642LysAsp: 3.642 ± 0.079
4.662LysGlu: 4.662 ± 0.101
2.085LysPhe: 2.085 ± 0.053
4.445LysGly: 4.445 ± 0.079
1.274LysHis: 1.274 ± 0.045
3.844LysIle: 3.844 ± 0.078
4.472LysLys: 4.472 ± 0.091
5.145LysLeu: 5.145 ± 0.089
2.02LysMet: 2.02 ± 0.061
2.915LysAsn: 2.915 ± 0.061
2.332LysPro: 2.332 ± 0.057
2.822LysGln: 2.822 ± 0.08
3.929LysArg: 3.929 ± 0.073
3.586LysSer: 3.586 ± 0.084
3.732LysThr: 3.732 ± 0.064
4.045LysVal: 4.045 ± 0.075
0.669LysTrp: 0.669 ± 0.032
2.453LysTyr: 2.453 ± 0.058
0.0LysXaa: 0.0 ± 0.0
Leu
6.976LeuAla: 6.976 ± 0.113
1.632LeuCys: 1.632 ± 0.045
4.531LeuAsp: 4.531 ± 0.078
4.714LeuGlu: 4.714 ± 0.088
5.03LeuPhe: 5.03 ± 0.09
5.816LeuGly: 5.816 ± 0.106
2.266LeuHis: 2.266 ± 0.061
5.663LeuIle: 5.663 ± 0.103
6.038LeuLys: 6.038 ± 0.088
10.513LeuLeu: 10.513 ± 0.187
2.389LeuMet: 2.389 ± 0.072
4.199LeuAsn: 4.199 ± 0.074
4.685LeuPro: 4.685 ± 0.106
4.081LeuGln: 4.081 ± 0.092
6.053LeuArg: 6.053 ± 0.111
7.229LeuSer: 7.229 ± 0.099
5.686LeuThr: 5.686 ± 0.092
5.222LeuVal: 5.222 ± 0.095
1.02LeuTrp: 1.02 ± 0.041
3.784LeuTyr: 3.784 ± 0.086
0.0LeuXaa: 0.0 ± 0.0
Met
2.124MetAla: 2.124 ± 0.056
0.257MetCys: 0.257 ± 0.017
1.272MetAsp: 1.272 ± 0.036
1.518MetGlu: 1.518 ± 0.049
0.833MetPhe: 0.833 ± 0.037
1.625MetGly: 1.625 ± 0.049
0.507MetHis: 0.507 ± 0.027
1.466MetIle: 1.466 ± 0.05
2.186MetLys: 2.186 ± 0.055
2.453MetLeu: 2.453 ± 0.065
0.748MetMet: 0.748 ± 0.041
1.16MetAsn: 1.16 ± 0.041
1.167MetPro: 1.167 ± 0.043
1.092MetGln: 1.092 ± 0.042
1.55MetArg: 1.55 ± 0.048
1.459MetSer: 1.459 ± 0.053
1.372MetThr: 1.372 ± 0.039
1.372MetVal: 1.372 ± 0.048
0.213MetTrp: 0.213 ± 0.017
0.616MetTyr: 0.616 ± 0.031
0.0MetXaa: 0.0 ± 0.0
Asn
3.559AsnAla: 3.559 ± 0.077
0.633AsnCys: 0.633 ± 0.033
2.332AsnAsp: 2.332 ± 0.059
2.712AsnGlu: 2.712 ± 0.069
2.156AsnPhe: 2.156 ± 0.053
3.322AsnGly: 3.322 ± 0.076
0.854AsnHis: 0.854 ± 0.032
3.187AsnIle: 3.187 ± 0.071
2.969AsnLys: 2.969 ± 0.07
4.017AsnLeu: 4.017 ± 0.073
1.035AsnMet: 1.035 ± 0.037
2.403AsnAsn: 2.403 ± 0.067
2.17AsnPro: 2.17 ± 0.066
1.396AsnGln: 1.396 ± 0.04
2.279AsnArg: 2.279 ± 0.063
2.302AsnSer: 2.302 ± 0.061
2.404AsnThr: 2.404 ± 0.064
2.978AsnVal: 2.978 ± 0.07
0.522AsnTrp: 0.522 ± 0.026
1.862AsnTyr: 1.862 ± 0.054
0.0AsnXaa: 0.0 ± 0.0
Pro
3.336ProAla: 3.336 ± 0.082
0.467ProCys: 0.467 ± 0.028
2.405ProAsp: 2.405 ± 0.054
3.042ProGlu: 3.042 ± 0.067
1.98ProPhe: 1.98 ± 0.054
2.13ProGly: 2.13 ± 0.049
0.862ProHis: 0.862 ± 0.031
2.436ProIle: 2.436 ± 0.056
2.316ProLys: 2.316 ± 0.062
3.71ProLeu: 3.71 ± 0.07
0.997ProMet: 0.997 ± 0.035
1.788ProAsn: 1.788 ± 0.048
1.14ProPro: 1.14 ± 0.048
1.747ProGln: 1.747 ± 0.066
1.587ProArg: 1.587 ± 0.049
2.263ProSer: 2.263 ± 0.059
2.662ProThr: 2.662 ± 0.062
2.221ProVal: 2.221 ± 0.06
0.361ProTrp: 0.361 ± 0.026
1.6ProTyr: 1.6 ± 0.046
0.0ProXaa: 0.0 ± 0.0
Gln
3.228GlnAla: 3.228 ± 0.078
0.343GlnCys: 0.343 ± 0.019
1.65GlnAsp: 1.65 ± 0.046
2.247GlnGlu: 2.247 ± 0.062
1.281GlnPhe: 1.281 ± 0.045
2.32GlnGly: 2.32 ± 0.051
0.774GlnHis: 0.774 ± 0.03
2.239GlnIle: 2.239 ± 0.048
2.514GlnLys: 2.514 ± 0.072
3.878GlnLeu: 3.878 ± 0.084
1.11GlnMet: 1.11 ± 0.046
1.515GlnAsn: 1.515 ± 0.049
1.486GlnPro: 1.486 ± 0.049
1.985GlnGln: 1.985 ± 0.065
2.348GlnArg: 2.348 ± 0.06
2.143GlnSer: 2.143 ± 0.058
2.618GlnThr: 2.618 ± 0.056
2.154GlnVal: 2.154 ± 0.049
0.443GlnTrp: 0.443 ± 0.023
1.381GlnTyr: 1.381 ± 0.043
0.0GlnXaa: 0.0 ± 0.0
Arg
3.764ArgAla: 3.764 ± 0.077
0.729ArgCys: 0.729 ± 0.035
2.403ArgAsp: 2.403 ± 0.059
3.214ArgGlu: 3.214 ± 0.076
2.743ArgPhe: 2.743 ± 0.058
2.951ArgGly: 2.951 ± 0.064
1.304ArgHis: 1.304 ± 0.045
3.692ArgIle: 3.692 ± 0.079
3.84ArgLys: 3.84 ± 0.077
6.307ArgLeu: 6.307 ± 0.095
1.496ArgMet: 1.496 ± 0.047
2.456ArgAsn: 2.456 ± 0.065
2.539ArgPro: 2.539 ± 0.065
2.484ArgGln: 2.484 ± 0.059
3.827ArgArg: 3.827 ± 0.088
3.046ArgSer: 3.046 ± 0.077
3.04ArgThr: 3.04 ± 0.064
2.921ArgVal: 2.921 ± 0.068
0.652ArgTrp: 0.652 ± 0.027
2.281ArgTyr: 2.281 ± 0.052
0.0ArgXaa: 0.0 ± 0.0
Ser
4.768SerAla: 4.768 ± 0.083
0.796SerCys: 0.796 ± 0.035
3.041SerAsp: 3.041 ± 0.069
3.139SerGlu: 3.139 ± 0.069
3.4SerPhe: 3.4 ± 0.074
4.222SerGly: 4.222 ± 0.092
1.14SerHis: 1.14 ± 0.039
3.987SerIle: 3.987 ± 0.074
3.366SerLys: 3.366 ± 0.072
6.405SerLeu: 6.405 ± 0.102
1.419SerMet: 1.419 ± 0.045
2.425SerAsn: 2.425 ± 0.063
2.35SerPro: 2.35 ± 0.054
1.827SerGln: 1.827 ± 0.051
2.883SerArg: 2.883 ± 0.063
3.618SerSer: 3.618 ± 0.074
3.417SerThr: 3.417 ± 0.07
3.892SerVal: 3.892 ± 0.075
0.62SerTrp: 0.62 ± 0.03
2.392SerTyr: 2.392 ± 0.057
0.0SerXaa: 0.0 ± 0.0
Thr
4.65ThrAla: 4.65 ± 0.079
0.618ThrCys: 0.618 ± 0.033
3.294ThrAsp: 3.294 ± 0.079
3.113ThrGlu: 3.113 ± 0.06
2.919ThrPhe: 2.919 ± 0.068
3.709ThrGly: 3.709 ± 0.082
1.116ThrHis: 1.116 ± 0.05
4.279ThrIle: 4.279 ± 0.071
3.241ThrLys: 3.241 ± 0.069
6.105ThrLeu: 6.105 ± 0.093
1.43ThrMet: 1.43 ± 0.044
2.412ThrAsn: 2.412 ± 0.063
3.057ThrPro: 3.057 ± 0.059
2.008ThrGln: 2.008 ± 0.049
2.342ThrArg: 2.342 ± 0.061
3.166ThrSer: 3.166 ± 0.061
3.674ThrThr: 3.674 ± 0.083
3.305ThrVal: 3.305 ± 0.065
0.569ThrTrp: 0.569 ± 0.025
2.352ThrTyr: 2.352 ± 0.055
0.0ThrXaa: 0.0 ± 0.0
Val
4.844ValAla: 4.844 ± 0.091
1.189ValCys: 1.189 ± 0.045
3.626ValAsp: 3.626 ± 0.076
3.713ValGlu: 3.713 ± 0.078
2.82ValPhe: 2.82 ± 0.067
4.413ValGly: 4.413 ± 0.093
1.064ValHis: 1.064 ± 0.043
3.74ValIle: 3.74 ± 0.081
3.787ValLys: 3.787 ± 0.072
5.464ValLeu: 5.464 ± 0.105
1.436ValMet: 1.436 ± 0.043
2.765ValAsn: 2.765 ± 0.064
2.31ValPro: 2.31 ± 0.054
1.902ValGln: 1.902 ± 0.052
3.599ValArg: 3.599 ± 0.082
4.068ValSer: 4.068 ± 0.075
3.392ValThr: 3.392 ± 0.073
4.425ValVal: 4.425 ± 0.086
0.681ValTrp: 0.681 ± 0.035
2.384ValTyr: 2.384 ± 0.056
0.0ValXaa: 0.0 ± 0.0
Trp
0.807TrpAla: 0.807 ± 0.036
0.171TrpCys: 0.171 ± 0.015
0.61TrpAsp: 0.61 ± 0.034
0.602TrpGlu: 0.602 ± 0.031
0.503TrpPhe: 0.503 ± 0.03
0.787TrpGly: 0.787 ± 0.036
0.218TrpHis: 0.218 ± 0.019
0.625TrpIle: 0.625 ± 0.028
0.752TrpLys: 0.752 ± 0.032
1.171TrpLeu: 1.171 ± 0.045
0.34TrpMet: 0.34 ± 0.019
0.535TrpAsn: 0.535 ± 0.035
0.29TrpPro: 0.29 ± 0.022
0.557TrpGln: 0.557 ± 0.029
0.63TrpArg: 0.63 ± 0.031
0.549TrpSer: 0.549 ± 0.028
0.566TrpThr: 0.566 ± 0.032
0.601TrpVal: 0.601 ± 0.03
0.182TrpTrp: 0.182 ± 0.019
0.377TrpTyr: 0.377 ± 0.022
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.332TyrAla: 3.332 ± 0.066
0.59TyrCys: 0.59 ± 0.029
2.407TyrAsp: 2.407 ± 0.06
2.269TyrGlu: 2.269 ± 0.061
1.993TyrPhe: 1.993 ± 0.057
2.692TyrGly: 2.692 ± 0.066
0.854TyrHis: 0.854 ± 0.037
2.506TyrIle: 2.506 ± 0.054
2.437TyrLys: 2.437 ± 0.069
3.685TyrLeu: 3.685 ± 0.069
0.83TyrMet: 0.83 ± 0.034
2.067TyrAsn: 2.067 ± 0.069
1.558TyrPro: 1.558 ± 0.051
1.233TyrGln: 1.233 ± 0.044
2.321TyrArg: 2.321 ± 0.061
2.247TyrSer: 2.247 ± 0.057
2.341TyrThr: 2.341 ± 0.056
2.391TyrVal: 2.391 ± 0.06
0.471TyrTrp: 0.471 ± 0.028
1.798TyrTyr: 1.798 ± 0.063
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2806 proteins (747103 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski