Satellite tobacco necrosis virus C

Taxonomy: Viruses; Riboviria; Albetovirus; Tobacco albetovirus 3

Average proteome isoelectric point is 9.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|O57031|O57031_9VIRU Coat protein (Fragment) OS=Satellite tobacco necrosis virus C OX=2025096 GN=coat PE=4 SV=1
MM1 pKa = 7.72TKK3 pKa = 9.93RR4 pKa = 11.84QKK6 pKa = 9.43RR7 pKa = 11.84TQTTRR12 pKa = 11.84SVRR15 pKa = 11.84SLTTRR20 pKa = 11.84DD21 pKa = 2.91VRR23 pKa = 11.84NIIRR27 pKa = 11.84GEE29 pKa = 4.02AEE31 pKa = 3.84TKK33 pKa = 10.57RR34 pKa = 11.84FVLVNTLNLNSTAGTVLNLSNGIIQGDD61 pKa = 4.56DD62 pKa = 2.65ISQRR66 pKa = 11.84AGDD69 pKa = 4.5KK70 pKa = 10.59IRR72 pKa = 11.84MTKK75 pKa = 10.13QILRR79 pKa = 11.84VRR81 pKa = 11.84ATAITNSQTFRR92 pKa = 11.84FIWFKK97 pKa = 11.54DD98 pKa = 3.14NTNRR102 pKa = 11.84GTTPSVTEE110 pKa = 4.06VLNSASFMAQYY121 pKa = 11.32NPVTLLQHH129 pKa = 6.97RR130 pKa = 11.84FTILKK135 pKa = 10.13DD136 pKa = 3.58VEE138 pKa = 4.6LDD140 pKa = 3.51CSLSGEE146 pKa = 4.53SIKK149 pKa = 10.84HH150 pKa = 5.38LVMTHH155 pKa = 6.33GGTSCFYY162 pKa = 11.04NGTTAVASANGPGAIFLLVIGDD184 pKa = 4.5SIVGTWDD191 pKa = 2.84VGYY194 pKa = 9.44EE195 pKa = 3.85AHH197 pKa = 7.07YY198 pKa = 11.12LDD200 pKa = 5.07LL201 pKa = 6.28

Molecular weight: 22.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|O57031|O57031_9VIRU Coat protein (Fragment) OS=Satellite tobacco necrosis virus C OX=2025096 GN=coat PE=4 SV=1
MM1 pKa = 7.72TKK3 pKa = 9.93RR4 pKa = 11.84QKK6 pKa = 9.43RR7 pKa = 11.84TQTTRR12 pKa = 11.84SVRR15 pKa = 11.84SLTTRR20 pKa = 11.84DD21 pKa = 2.91VRR23 pKa = 11.84NIIRR27 pKa = 11.84GEE29 pKa = 4.02AEE31 pKa = 3.84TKK33 pKa = 10.57RR34 pKa = 11.84FVLVNTLNLNSTAGTVLNLSNGIIQGDD61 pKa = 4.56DD62 pKa = 2.65ISQRR66 pKa = 11.84AGDD69 pKa = 4.5KK70 pKa = 10.59IRR72 pKa = 11.84MTKK75 pKa = 10.13QILRR79 pKa = 11.84VRR81 pKa = 11.84ATAITNSQTFRR92 pKa = 11.84FIWFKK97 pKa = 11.54DD98 pKa = 3.14NTNRR102 pKa = 11.84GTTPSVTEE110 pKa = 4.06VLNSASFMAQYY121 pKa = 11.32NPVTLLQHH129 pKa = 6.97RR130 pKa = 11.84FTILKK135 pKa = 10.13DD136 pKa = 3.58VEE138 pKa = 4.6LDD140 pKa = 3.51CSLSGEE146 pKa = 4.53SIKK149 pKa = 10.84HH150 pKa = 5.38LVMTHH155 pKa = 6.33GGTSCFYY162 pKa = 11.04NGTTAVASANGPGAIFLLVIGDD184 pKa = 4.5SIVGTWDD191 pKa = 2.84VGYY194 pKa = 9.44EE195 pKa = 3.85AHH197 pKa = 7.07YY198 pKa = 11.12LDD200 pKa = 5.07LL201 pKa = 6.28

Molecular weight: 22.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

201

201

201

201.0

22.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.97 ± 0.0

0.995 ± 0.0

4.975 ± 0.0

2.985 ± 0.0

3.98 ± 0.0

7.463 ± 0.0

1.99 ± 0.0

6.965 ± 0.0

3.98 ± 0.0

8.955 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.99 ± 0.0

6.468 ± 0.0

1.493 ± 0.0

3.98 ± 0.0

7.463 ± 0.0

7.463 ± 0.0

12.438 ± 0.0

7.463 ± 0.0

0.995 ± 0.0

1.99 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski