Tupaia glis polyomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Alphapolyomavirus

Average proteome isoelectric point is 6.86

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S1CJR4|A0A2S1CJR4_9POLY Uncharacterized protein OS=Tupaia glis polyomavirus 1 OX=2170402 PE=4 SV=1
MM1 pKa = 7.39GGVLSALIEE10 pKa = 4.49VIVLATEE17 pKa = 4.43IAAEE21 pKa = 4.13TGLTAEE27 pKa = 4.65ALLTGEE33 pKa = 4.6ALSALEE39 pKa = 4.51AEE41 pKa = 5.12VFSLMTIDD49 pKa = 5.04GISGIEE55 pKa = 4.02ALAQLGWSAEE65 pKa = 4.12QFSTLSYY72 pKa = 10.13IANTFSTAVGYY83 pKa = 10.73GVMFQTVSGISSLISVGMRR102 pKa = 11.84LGLEE106 pKa = 3.97VSSVNRR112 pKa = 11.84AKK114 pKa = 10.07TEE116 pKa = 3.92QEE118 pKa = 3.65LTALFGNIAKK128 pKa = 9.98VIHH131 pKa = 6.42VNLSHH136 pKa = 7.24HH137 pKa = 7.24LDD139 pKa = 3.53PLKK142 pKa = 10.54WCDD145 pKa = 4.1SIMANYY151 pKa = 9.29PKK153 pKa = 10.2EE154 pKa = 4.12LEE156 pKa = 4.64NIPLDD161 pKa = 3.87LRR163 pKa = 11.84SKK165 pKa = 10.62LGLIIEE171 pKa = 4.46RR172 pKa = 11.84ARR174 pKa = 11.84WVIQKK179 pKa = 8.38TPTTLPSEE187 pKa = 4.19EE188 pKa = 4.61SGDD191 pKa = 3.4IVQLYY196 pKa = 7.04EE197 pKa = 4.21APGGALQRR205 pKa = 11.84VTPDD209 pKa = 2.59WLLPLILRR217 pKa = 11.84LNGSQEE223 pKa = 3.91KK224 pKa = 9.24TPLCNSIQGSQTT236 pKa = 2.98

Molecular weight: 25.32 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S1CJR5|A0A2S1CJR5_9POLY Large T antigen OS=Tupaia glis polyomavirus 1 OX=2170402 GN=731T PE=4 SV=1
MM1 pKa = 7.19SQASCQLLAGRR12 pKa = 11.84HH13 pKa = 5.13LCSSSVLALSRR24 pKa = 11.84HH25 pKa = 6.32LIPWLAACPVPAVISSRR42 pKa = 11.84TKK44 pKa = 10.14EE45 pKa = 4.09VATTPVTSHH54 pKa = 5.95TKK56 pKa = 10.02VSYY59 pKa = 10.84

Molecular weight: 6.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9

0

9

2531

59

731

281.2

31.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.294 ± 0.498

2.924 ± 0.497

3.991 ± 0.454

7.033 ± 0.239

3.951 ± 0.678

6.006 ± 0.731

2.173 ± 0.36

5.176 ± 0.527

6.559 ± 0.522

11.339 ± 0.788

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.45 ± 0.315

3.674 ± 0.432

6.875 ± 0.727

4.425 ± 0.275

4.781 ± 0.387

7.665 ± 0.561

5.61 ± 0.741

5.531 ± 0.232

1.817 ± 0.528

2.726 ± 0.208
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski