Vibrio virus 2019VC1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Jhansiroadvirus

Average proteome isoelectric point is 6.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 69 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6M5CAX0|A0A6M5CAX0_9CAUD Uncharacterized protein OS=Vibrio virus 2019VC1 OX=2761539 GN=2019VC1_48 PE=4 SV=1
MM1 pKa = 8.02NMICKK6 pKa = 10.17ASCSDD11 pKa = 2.88WFTAGRR17 pKa = 11.84VYY19 pKa = 9.86PAAMEE24 pKa = 4.56NPTFMISAITGDD36 pKa = 4.45DD37 pKa = 3.49MVSDD41 pKa = 4.02LTVTDD46 pKa = 3.77LTGLFQLTDD55 pKa = 3.23IKK57 pKa = 11.01RR58 pKa = 11.84CLSLFAALHH67 pKa = 5.94LSFPAYY73 pKa = 10.41SGG75 pKa = 3.34

Molecular weight: 8.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6M5CA15|A0A6M5CA15_9CAUD Uncharacterized protein OS=Vibrio virus 2019VC1 OX=2761539 GN=2019VC1_49 PE=4 SV=1
MM1 pKa = 7.52RR2 pKa = 11.84RR3 pKa = 11.84CIFHH7 pKa = 6.93SPLIPVRR14 pKa = 11.84FKK16 pKa = 11.23GLEE19 pKa = 3.55IADD22 pKa = 4.53NIRR25 pKa = 11.84TAAASGRR32 pKa = 11.84LFLRR36 pKa = 11.84KK37 pKa = 9.4SSQNIAIRR45 pKa = 11.84MFNDD49 pKa = 2.96KK50 pKa = 10.52FINDD54 pKa = 3.81GARR57 pKa = 11.84NDD59 pKa = 3.79DD60 pKa = 3.82EE61 pKa = 5.99RR62 pKa = 11.84NVLAA66 pKa = 5.68

Molecular weight: 7.56 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

69

0

69

13219

37

1317

191.6

21.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.041 ± 0.459

1.324 ± 0.142

5.167 ± 0.285

6.453 ± 0.287

3.873 ± 0.217

6.65 ± 0.337

2.133 ± 0.243

6.702 ± 0.293

7.3 ± 0.46

7.958 ± 0.472

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.981 ± 0.175

4.531 ± 0.235

3.465 ± 0.284

3.851 ± 0.336

5.999 ± 0.297

6.43 ± 0.249

5.878 ± 0.346

6.74 ± 0.325

1.324 ± 0.125

3.2 ± 0.275
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski