Cyclovirus Chimp11

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus; Chimpanzee associated cyclovirus 1

Average proteome isoelectric point is 8.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D4N3P7|D4N3P7_9CIRC Capsid protein OS=Cyclovirus Chimp11 OX=742920 GN=cap PE=4 SV=1
MM1 pKa = 7.71SNRR4 pKa = 11.84TVRR7 pKa = 11.84KK8 pKa = 9.49FCFTWNNYY16 pKa = 8.61EE17 pKa = 3.44FDD19 pKa = 4.46AYY21 pKa = 10.49AKK23 pKa = 10.9CEE25 pKa = 3.93TFLNNFAKK33 pKa = 10.57YY34 pKa = 10.03GIVGEE39 pKa = 4.34EE40 pKa = 4.3LCPSTGTPHH49 pKa = 6.18LQGYY53 pKa = 9.24VNLIKK58 pKa = 9.37PTRR61 pKa = 11.84FSTIKK66 pKa = 10.19KK67 pKa = 8.11HH68 pKa = 5.11LHH70 pKa = 4.87NAIHH74 pKa = 6.47IEE76 pKa = 3.94KK77 pKa = 10.73ANGSDD82 pKa = 3.6EE83 pKa = 4.48QNQTYY88 pKa = 9.65CRR90 pKa = 11.84KK91 pKa = 10.23SGIFFEE97 pKa = 4.68KK98 pKa = 10.77GEE100 pKa = 4.58PIKK103 pKa = 10.55QGQRR107 pKa = 11.84TDD109 pKa = 3.27LQLLVKK115 pKa = 10.11DD116 pKa = 3.73TMEE119 pKa = 4.65PSNTLKK125 pKa = 10.83DD126 pKa = 3.28IATKK130 pKa = 10.65HH131 pKa = 5.76PIAYY135 pKa = 8.54IRR137 pKa = 11.84YY138 pKa = 7.9FRR140 pKa = 11.84GIQEE144 pKa = 4.4LRR146 pKa = 11.84RR147 pKa = 11.84MVLPVPPRR155 pKa = 11.84NYY157 pKa = 7.83PTEE160 pKa = 3.67VRR162 pKa = 11.84YY163 pKa = 10.06YY164 pKa = 9.21WGPPGSGKK172 pKa = 8.76SRR174 pKa = 11.84RR175 pKa = 11.84ALQEE179 pKa = 3.42ATEE182 pKa = 4.05ISTNGIYY189 pKa = 10.21YY190 pKa = 10.12KK191 pKa = 10.53PRR193 pKa = 11.84GQWWDD198 pKa = 3.42GYY200 pKa = 7.55EE201 pKa = 3.96QQSCVIIDD209 pKa = 4.9DD210 pKa = 4.45FYY212 pKa = 11.76GWIKK216 pKa = 10.51YY217 pKa = 10.15DD218 pKa = 4.69EE219 pKa = 4.23ILKK222 pKa = 10.17ICDD225 pKa = 3.22RR226 pKa = 11.84YY227 pKa = 9.85PYY229 pKa = 10.1KK230 pKa = 10.91VQIKK234 pKa = 10.07GGYY237 pKa = 8.28EE238 pKa = 4.0EE239 pKa = 4.65FTSTHH244 pKa = 4.68IWFTSNVDD252 pKa = 2.84TDD254 pKa = 4.26LLYY257 pKa = 11.15KK258 pKa = 10.08FNNYY262 pKa = 9.13INTAFEE268 pKa = 3.72RR269 pKa = 11.84RR270 pKa = 11.84ITIKK274 pKa = 10.45EE275 pKa = 4.27HH276 pKa = 5.24ITLSS280 pKa = 3.52

Molecular weight: 32.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D4N3P7|D4N3P7_9CIRC Capsid protein OS=Cyclovirus Chimp11 OX=742920 GN=cap PE=4 SV=1
MM1 pKa = 7.47AFKK4 pKa = 10.5RR5 pKa = 11.84YY6 pKa = 7.66FRR8 pKa = 11.84RR9 pKa = 11.84RR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84VRR14 pKa = 11.84KK15 pKa = 7.51PVRR18 pKa = 11.84RR19 pKa = 11.84FRR21 pKa = 11.84RR22 pKa = 11.84RR23 pKa = 11.84YY24 pKa = 7.92RR25 pKa = 11.84MRR27 pKa = 11.84RR28 pKa = 11.84RR29 pKa = 11.84VLRR32 pKa = 11.84SKK34 pKa = 9.88PGNMLTKK41 pKa = 9.51LTKK44 pKa = 9.08ITTLSVEE51 pKa = 4.15NNINATWSCSFKK63 pKa = 10.68MGDD66 pKa = 3.14FTEE69 pKa = 4.29YY70 pKa = 11.04GRR72 pKa = 11.84LAPNFEE78 pKa = 4.37TVKK81 pKa = 10.39LNKK84 pKa = 9.75VVVRR88 pKa = 11.84VQPLQNVANNSTSSVPAYY106 pKa = 10.49VVVPWHH112 pKa = 5.92YY113 pKa = 11.25NIALPKK119 pKa = 10.63DD120 pKa = 3.31FASYY124 pKa = 11.01LRR126 pKa = 11.84IDD128 pKa = 3.44KK129 pKa = 10.75HH130 pKa = 6.08KK131 pKa = 10.92LRR133 pKa = 11.84AQTVGTSMSFVPNIVTVGVANEE155 pKa = 4.2GANPTGRR162 pKa = 11.84NITWKK167 pKa = 8.77PTLEE171 pKa = 4.07CLGVDD176 pKa = 3.18INIPRR181 pKa = 11.84VYY183 pKa = 10.34CGAICFQGQPDD194 pKa = 3.62MEE196 pKa = 4.31GRR198 pKa = 11.84KK199 pKa = 7.26TAFNIITDD207 pKa = 3.78VYY209 pKa = 10.41CTFRR213 pKa = 11.84NQNTMKK219 pKa = 10.53VV220 pKa = 3.37

Molecular weight: 25.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

500

220

280

250.0

29.18

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.4 ± 0.693

2.2 ± 0.048

3.6 ± 0.574

5.0 ± 1.495

5.0 ± 0.0

5.8 ± 0.526

1.8 ± 0.586

7.0 ± 1.315

7.0 ± 0.418

5.6 ± 0.096

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.0 ± 0.777

6.8 ± 0.909

5.2 ± 0.167

3.6 ± 0.574

8.4 ± 1.949

4.6 ± 0.036

8.0 ± 0.12

6.6 ± 2.535

1.8 ± 0.287

5.6 ± 1.291
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski