Amino acid dipepetide frequency for Phytophthora endornavirus 1 (PhEV-1)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.036AlaAla: 3.036 ± 0.0
0.217AlaCys: 0.217 ± 0.0
3.253AlaAsp: 3.253 ± 0.0
4.337AlaGlu: 4.337 ± 0.0
1.084AlaPhe: 1.084 ± 0.0
3.687AlaGly: 3.687 ± 0.0
0.867AlaHis: 0.867 ± 0.0
2.602AlaIle: 2.602 ± 0.0
1.735AlaLys: 1.735 ± 0.0
4.337AlaLeu: 4.337 ± 0.0
1.518AlaMet: 1.518 ± 0.0
3.036AlaAsn: 3.036 ± 0.0
1.518AlaPro: 1.518 ± 0.0
1.084AlaGln: 1.084 ± 0.0
2.602AlaArg: 2.602 ± 0.0
5.856AlaSer: 5.856 ± 0.0
2.819AlaThr: 2.819 ± 0.0
4.988AlaVal: 4.988 ± 0.0
0.434AlaTrp: 0.434 ± 0.0
1.518AlaTyr: 1.518 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.518CysAla: 1.518 ± 0.0
0.867CysCys: 0.867 ± 0.0
2.602CysAsp: 2.602 ± 0.0
1.301CysGlu: 1.301 ± 0.0
0.651CysPhe: 0.651 ± 0.0
1.735CysGly: 1.735 ± 0.0
0.434CysHis: 0.434 ± 0.0
0.434CysIle: 0.434 ± 0.0
0.867CysLys: 0.867 ± 0.0
1.735CysLeu: 1.735 ± 0.0
0.217CysMet: 0.217 ± 0.0
1.735CysAsn: 1.735 ± 0.0
0.867CysPro: 0.867 ± 0.0
0.434CysGln: 0.434 ± 0.0
0.867CysArg: 0.867 ± 0.0
1.735CysSer: 1.735 ± 0.0
1.735CysThr: 1.735 ± 0.0
1.735CysVal: 1.735 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.434CysTyr: 0.434 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.169AspAla: 2.169 ± 0.0
1.518AspCys: 1.518 ± 0.0
3.253AspAsp: 3.253 ± 0.0
3.47AspGlu: 3.47 ± 0.0
2.386AspPhe: 2.386 ± 0.0
2.602AspGly: 2.602 ± 0.0
1.735AspHis: 1.735 ± 0.0
2.819AspIle: 2.819 ± 0.0
1.952AspLys: 1.952 ± 0.0
6.289AspLeu: 6.289 ± 0.0
1.518AspMet: 1.518 ± 0.0
2.169AspAsn: 2.169 ± 0.0
1.952AspPro: 1.952 ± 0.0
1.735AspGln: 1.735 ± 0.0
2.602AspArg: 2.602 ± 0.0
4.121AspSer: 4.121 ± 0.0
4.988AspThr: 4.988 ± 0.0
4.554AspVal: 4.554 ± 0.0
1.952AspTrp: 1.952 ± 0.0
1.952AspTyr: 1.952 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
3.47GluAla: 3.47 ± 0.0
1.301GluCys: 1.301 ± 0.0
3.47GluAsp: 3.47 ± 0.0
5.639GluGlu: 5.639 ± 0.0
2.602GluPhe: 2.602 ± 0.0
3.904GluGly: 3.904 ± 0.0
1.518GluHis: 1.518 ± 0.0
4.121GluIle: 4.121 ± 0.0
2.602GluLys: 2.602 ± 0.0
8.675GluLeu: 8.675 ± 0.0
2.602GluMet: 2.602 ± 0.0
2.169GluAsn: 2.169 ± 0.0
3.47GluPro: 3.47 ± 0.0
1.952GluGln: 1.952 ± 0.0
3.687GluArg: 3.687 ± 0.0
5.205GluSer: 5.205 ± 0.0
2.819GluThr: 2.819 ± 0.0
6.506GluVal: 6.506 ± 0.0
0.651GluTrp: 0.651 ± 0.0
1.735GluTyr: 1.735 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
0.217PheAla: 0.217 ± 0.0
0.867PheCys: 0.867 ± 0.0
2.602PheAsp: 2.602 ± 0.0
3.036PheGlu: 3.036 ± 0.0
0.867PhePhe: 0.867 ± 0.0
3.036PheGly: 3.036 ± 0.0
1.084PheHis: 1.084 ± 0.0
1.735PheIle: 1.735 ± 0.0
2.819PheLys: 2.819 ± 0.0
1.735PheLeu: 1.735 ± 0.0
0.217PheMet: 0.217 ± 0.0
1.735PheAsn: 1.735 ± 0.0
1.084PhePro: 1.084 ± 0.0
0.867PheGln: 0.867 ± 0.0
0.651PheArg: 0.651 ± 0.0
2.602PheSer: 2.602 ± 0.0
1.735PheThr: 1.735 ± 0.0
1.301PheVal: 1.301 ± 0.0
0.0PheTrp: 0.0 ± 0.0
0.651PheTyr: 0.651 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
3.47GlyAla: 3.47 ± 0.0
1.735GlyCys: 1.735 ± 0.0
3.687GlyAsp: 3.687 ± 0.0
4.554GlyGlu: 4.554 ± 0.0
1.735GlyPhe: 1.735 ± 0.0
2.819GlyGly: 2.819 ± 0.0
1.735GlyHis: 1.735 ± 0.0
1.735GlyIle: 1.735 ± 0.0
3.687GlyLys: 3.687 ± 0.0
6.072GlyLeu: 6.072 ± 0.0
1.301GlyMet: 1.301 ± 0.0
2.602GlyAsn: 2.602 ± 0.0
2.169GlyPro: 2.169 ± 0.0
0.651GlyGln: 0.651 ± 0.0
2.819GlyArg: 2.819 ± 0.0
4.121GlySer: 4.121 ± 0.0
3.036GlyThr: 3.036 ± 0.0
5.639GlyVal: 5.639 ± 0.0
1.301GlyTrp: 1.301 ± 0.0
2.602GlyTyr: 2.602 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
1.084HisAla: 1.084 ± 0.0
0.434HisCys: 0.434 ± 0.0
0.651HisAsp: 0.651 ± 0.0
1.301HisGlu: 1.301 ± 0.0
0.651HisPhe: 0.651 ± 0.0
1.735HisGly: 1.735 ± 0.0
1.518HisHis: 1.518 ± 0.0
1.301HisIle: 1.301 ± 0.0
1.301HisLys: 1.301 ± 0.0
2.386HisLeu: 2.386 ± 0.0
1.518HisMet: 1.518 ± 0.0
1.301HisAsn: 1.301 ± 0.0
1.518HisPro: 1.518 ± 0.0
1.518HisGln: 1.518 ± 0.0
0.867HisArg: 0.867 ± 0.0
3.036HisSer: 3.036 ± 0.0
3.036HisThr: 3.036 ± 0.0
0.651HisVal: 0.651 ± 0.0
0.651HisTrp: 0.651 ± 0.0
0.434HisTyr: 0.434 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.687IleAla: 3.687 ± 0.0
2.386IleCys: 2.386 ± 0.0
3.687IleAsp: 3.687 ± 0.0
3.253IleGlu: 3.253 ± 0.0
0.434IlePhe: 0.434 ± 0.0
3.253IleGly: 3.253 ± 0.0
1.952IleHis: 1.952 ± 0.0
3.253IleIle: 3.253 ± 0.0
3.036IleLys: 3.036 ± 0.0
4.121IleLeu: 4.121 ± 0.0
0.651IleMet: 0.651 ± 0.0
3.253IleAsn: 3.253 ± 0.0
2.819IlePro: 2.819 ± 0.0
2.819IleGln: 2.819 ± 0.0
1.084IleArg: 1.084 ± 0.0
4.988IleSer: 4.988 ± 0.0
4.337IleThr: 4.337 ± 0.0
3.904IleVal: 3.904 ± 0.0
1.301IleTrp: 1.301 ± 0.0
1.301IleTyr: 1.301 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
2.169LysAla: 2.169 ± 0.0
1.084LysCys: 1.084 ± 0.0
3.687LysAsp: 3.687 ± 0.0
3.036LysGlu: 3.036 ± 0.0
1.735LysPhe: 1.735 ± 0.0
2.386LysGly: 2.386 ± 0.0
1.518LysHis: 1.518 ± 0.0
3.687LysIle: 3.687 ± 0.0
4.337LysLys: 4.337 ± 0.0
6.072LysLeu: 6.072 ± 0.0
1.518LysMet: 1.518 ± 0.0
3.036LysAsn: 3.036 ± 0.0
3.253LysPro: 3.253 ± 0.0
1.301LysGln: 1.301 ± 0.0
1.735LysArg: 1.735 ± 0.0
2.602LysSer: 2.602 ± 0.0
6.723LysThr: 6.723 ± 0.0
3.036LysVal: 3.036 ± 0.0
1.301LysTrp: 1.301 ± 0.0
2.819LysTyr: 2.819 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
6.289LeuAla: 6.289 ± 0.0
2.386LeuCys: 2.386 ± 0.0
4.771LeuAsp: 4.771 ± 0.0
6.289LeuGlu: 6.289 ± 0.0
3.687LeuPhe: 3.687 ± 0.0
5.639LeuGly: 5.639 ± 0.0
1.518LeuHis: 1.518 ± 0.0
4.554LeuIle: 4.554 ± 0.0
6.94LeuLys: 6.94 ± 0.0
9.542LeuLeu: 9.542 ± 0.0
2.169LeuMet: 2.169 ± 0.0
6.723LeuAsn: 6.723 ± 0.0
4.121LeuPro: 4.121 ± 0.0
4.554LeuGln: 4.554 ± 0.0
6.289LeuArg: 6.289 ± 0.0
10.627LeuSer: 10.627 ± 0.0
6.723LeuThr: 6.723 ± 0.0
8.892LeuVal: 8.892 ± 0.0
0.867LeuTrp: 0.867 ± 0.0
0.867LeuTyr: 0.867 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
1.084MetAla: 1.084 ± 0.0
1.084MetCys: 1.084 ± 0.0
1.735MetAsp: 1.735 ± 0.0
1.518MetGlu: 1.518 ± 0.0
0.434MetPhe: 0.434 ± 0.0
1.952MetGly: 1.952 ± 0.0
0.651MetHis: 0.651 ± 0.0
1.518MetIle: 1.518 ± 0.0
1.518MetLys: 1.518 ± 0.0
3.253MetLeu: 3.253 ± 0.0
0.651MetMet: 0.651 ± 0.0
1.301MetAsn: 1.301 ± 0.0
0.0MetPro: 0.0 ± 0.0
1.084MetGln: 1.084 ± 0.0
1.518MetArg: 1.518 ± 0.0
2.602MetSer: 2.602 ± 0.0
1.301MetThr: 1.301 ± 0.0
1.301MetVal: 1.301 ± 0.0
0.651MetTrp: 0.651 ± 0.0
1.518MetTyr: 1.518 ± 0.0
0.217MetXaa: 0.217 ± 0.0
Asn
2.819AsnAla: 2.819 ± 0.0
0.867AsnCys: 0.867 ± 0.0
2.602AsnAsp: 2.602 ± 0.0
2.602AsnGlu: 2.602 ± 0.0
1.084AsnPhe: 1.084 ± 0.0
1.735AsnGly: 1.735 ± 0.0
1.735AsnHis: 1.735 ± 0.0
2.602AsnIle: 2.602 ± 0.0
3.47AsnLys: 3.47 ± 0.0
5.856AsnLeu: 5.856 ± 0.0
2.386AsnMet: 2.386 ± 0.0
1.952AsnAsn: 1.952 ± 0.0
2.169AsnPro: 2.169 ± 0.0
2.819AsnGln: 2.819 ± 0.0
1.518AsnArg: 1.518 ± 0.0
3.687AsnSer: 3.687 ± 0.0
3.253AsnThr: 3.253 ± 0.0
3.687AsnVal: 3.687 ± 0.0
1.301AsnTrp: 1.301 ± 0.0
2.169AsnTyr: 2.169 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
1.952ProAla: 1.952 ± 0.0
0.651ProCys: 0.651 ± 0.0
2.386ProAsp: 2.386 ± 0.0
3.036ProGlu: 3.036 ± 0.0
1.518ProPhe: 1.518 ± 0.0
2.819ProGly: 2.819 ± 0.0
0.651ProHis: 0.651 ± 0.0
4.121ProIle: 4.121 ± 0.0
0.867ProLys: 0.867 ± 0.0
3.036ProLeu: 3.036 ± 0.0
0.434ProMet: 0.434 ± 0.0
1.735ProAsn: 1.735 ± 0.0
0.867ProPro: 0.867 ± 0.0
1.084ProGln: 1.084 ± 0.0
1.735ProArg: 1.735 ± 0.0
3.036ProSer: 3.036 ± 0.0
3.036ProThr: 3.036 ± 0.0
3.47ProVal: 3.47 ± 0.0
0.434ProTrp: 0.434 ± 0.0
1.084ProTyr: 1.084 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
1.952GlnAla: 1.952 ± 0.0
0.434GlnCys: 0.434 ± 0.0
1.735GlnAsp: 1.735 ± 0.0
3.687GlnGlu: 3.687 ± 0.0
1.084GlnPhe: 1.084 ± 0.0
2.386GlnGly: 2.386 ± 0.0
0.867GlnHis: 0.867 ± 0.0
2.819GlnIle: 2.819 ± 0.0
1.301GlnLys: 1.301 ± 0.0
4.337GlnLeu: 4.337 ± 0.0
0.434GlnMet: 0.434 ± 0.0
0.434GlnAsn: 0.434 ± 0.0
1.301GlnPro: 1.301 ± 0.0
1.952GlnGln: 1.952 ± 0.0
2.386GlnArg: 2.386 ± 0.0
2.169GlnSer: 2.169 ± 0.0
2.819GlnThr: 2.819 ± 0.0
2.386GlnVal: 2.386 ± 0.0
0.867GlnTrp: 0.867 ± 0.0
1.301GlnTyr: 1.301 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
3.253ArgAla: 3.253 ± 0.0
1.518ArgCys: 1.518 ± 0.0
2.386ArgAsp: 2.386 ± 0.0
2.819ArgGlu: 2.819 ± 0.0
1.735ArgPhe: 1.735 ± 0.0
3.036ArgGly: 3.036 ± 0.0
1.301ArgHis: 1.301 ± 0.0
2.819ArgIle: 2.819 ± 0.0
1.952ArgLys: 1.952 ± 0.0
6.072ArgLeu: 6.072 ± 0.0
0.651ArgMet: 0.651 ± 0.0
1.952ArgAsn: 1.952 ± 0.0
1.084ArgPro: 1.084 ± 0.0
2.169ArgGln: 2.169 ± 0.0
4.337ArgArg: 4.337 ± 0.0
3.253ArgSer: 3.253 ± 0.0
3.036ArgThr: 3.036 ± 0.0
3.253ArgVal: 3.253 ± 0.0
0.434ArgTrp: 0.434 ± 0.0
1.084ArgTyr: 1.084 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
4.337SerAla: 4.337 ± 0.0
1.518SerCys: 1.518 ± 0.0
2.819SerAsp: 2.819 ± 0.0
6.289SerGlu: 6.289 ± 0.0
1.084SerPhe: 1.084 ± 0.0
3.47SerGly: 3.47 ± 0.0
2.819SerHis: 2.819 ± 0.0
3.687SerIle: 3.687 ± 0.0
5.422SerLys: 5.422 ± 0.0
7.591SerLeu: 7.591 ± 0.0
3.253SerMet: 3.253 ± 0.0
4.554SerAsn: 4.554 ± 0.0
3.687SerPro: 3.687 ± 0.0
4.121SerGln: 4.121 ± 0.0
5.205SerArg: 5.205 ± 0.0
4.771SerSer: 4.771 ± 0.0
3.904SerThr: 3.904 ± 0.0
4.771SerVal: 4.771 ± 0.0
2.819SerTrp: 2.819 ± 0.0
2.602SerTyr: 2.602 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
1.952ThrAla: 1.952 ± 0.0
1.301ThrCys: 1.301 ± 0.0
3.47ThrAsp: 3.47 ± 0.0
3.47ThrGlu: 3.47 ± 0.0
1.952ThrPhe: 1.952 ± 0.0
5.639ThrGly: 5.639 ± 0.0
1.735ThrHis: 1.735 ± 0.0
5.422ThrIle: 5.422 ± 0.0
4.337ThrLys: 4.337 ± 0.0
9.976ThrLeu: 9.976 ± 0.0
1.952ThrMet: 1.952 ± 0.0
3.47ThrAsn: 3.47 ± 0.0
1.735ThrPro: 1.735 ± 0.0
1.518ThrGln: 1.518 ± 0.0
3.253ThrArg: 3.253 ± 0.0
6.072ThrSer: 6.072 ± 0.0
6.072ThrThr: 6.072 ± 0.0
4.554ThrVal: 4.554 ± 0.0
1.301ThrTrp: 1.301 ± 0.0
1.301ThrTyr: 1.301 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
2.819ValAla: 2.819 ± 0.0
0.867ValCys: 0.867 ± 0.0
4.337ValAsp: 4.337 ± 0.0
6.289ValGlu: 6.289 ± 0.0
2.602ValPhe: 2.602 ± 0.0
3.904ValGly: 3.904 ± 0.0
1.735ValHis: 1.735 ± 0.0
3.904ValIle: 3.904 ± 0.0
5.639ValLys: 5.639 ± 0.0
6.506ValLeu: 6.506 ± 0.0
2.602ValMet: 2.602 ± 0.0
3.253ValAsn: 3.253 ± 0.0
3.036ValPro: 3.036 ± 0.0
2.386ValGln: 2.386 ± 0.0
3.253ValArg: 3.253 ± 0.0
4.337ValSer: 4.337 ± 0.0
6.506ValThr: 6.506 ± 0.0
7.807ValVal: 7.807 ± 0.0
1.084ValTrp: 1.084 ± 0.0
3.253ValTyr: 3.253 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
1.301TrpAla: 1.301 ± 0.0
0.217TrpCys: 0.217 ± 0.0
1.301TrpAsp: 1.301 ± 0.0
0.867TrpGlu: 0.867 ± 0.0
0.867TrpPhe: 0.867 ± 0.0
1.084TrpGly: 1.084 ± 0.0
0.867TrpHis: 0.867 ± 0.0
0.651TrpIle: 0.651 ± 0.0
0.867TrpLys: 0.867 ± 0.0
2.602TrpLeu: 2.602 ± 0.0
0.651TrpMet: 0.651 ± 0.0
1.084TrpAsn: 1.084 ± 0.0
0.434TrpPro: 0.434 ± 0.0
0.651TrpGln: 0.651 ± 0.0
1.084TrpArg: 1.084 ± 0.0
1.084TrpSer: 1.084 ± 0.0
0.651TrpThr: 0.651 ± 0.0
1.301TrpVal: 1.301 ± 0.0
0.434TrpTrp: 0.434 ± 0.0
0.434TrpTyr: 0.434 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.952TyrAla: 1.952 ± 0.0
0.651TyrCys: 0.651 ± 0.0
1.301TyrAsp: 1.301 ± 0.0
1.301TyrGlu: 1.301 ± 0.0
0.651TyrPhe: 0.651 ± 0.0
0.651TyrGly: 0.651 ± 0.0
0.651TyrHis: 0.651 ± 0.0
1.735TyrIle: 1.735 ± 0.0
2.386TyrLys: 2.386 ± 0.0
3.036TyrLeu: 3.036 ± 0.0
0.434TyrMet: 0.434 ± 0.0
2.819TyrAsn: 2.819 ± 0.0
0.867TyrPro: 0.867 ± 0.0
1.952TyrGln: 1.952 ± 0.0
0.867TyrArg: 0.867 ± 0.0
2.819TyrSer: 2.819 ± 0.0
1.735TyrThr: 1.735 ± 0.0
2.386TyrVal: 2.386 ± 0.0
0.651TyrTrp: 0.651 ± 0.0
1.301TyrTyr: 1.301 ± 0.0
0.217TyrXaa: 0.217 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.217XaaLeu: 0.217 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.217XaaThr: 0.217 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (4612 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski