Capybara microvirus Cap3_SP_470

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 4.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W5A5|A0A4P8W5A5_9VIRU Minor capsid protein OS=Capybara microvirus Cap3_SP_470 OX=2585465 PE=4 SV=1
MM1 pKa = 7.79IYY3 pKa = 10.49GIYY6 pKa = 10.07CMKK9 pKa = 10.48DD10 pKa = 3.09VKK12 pKa = 10.24TGFLNPFVEE21 pKa = 4.49VNDD24 pKa = 3.97DD25 pKa = 3.47VAVRR29 pKa = 11.84GFANAMMAPGTVYY42 pKa = 11.17SNFSADD48 pKa = 3.26FSLYY52 pKa = 10.43KK53 pKa = 10.62VGLFDD58 pKa = 5.96SEE60 pKa = 4.99LCVLSGVDD68 pKa = 3.12KK69 pKa = 11.35VLIAEE74 pKa = 4.9ASQFVKK80 pKa = 10.89

Molecular weight: 8.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V1FVU1|A0A4V1FVU1_9VIRU Replication initiator protein OS=Capybara microvirus Cap3_SP_470 OX=2585465 PE=4 SV=1
MM1 pKa = 7.49NSRR4 pKa = 11.84FAVAPQVNINRR15 pKa = 11.84STFRR19 pKa = 11.84RR20 pKa = 11.84DD21 pKa = 3.17HH22 pKa = 5.11TVKK25 pKa = 10.05TSFNMGEE32 pKa = 4.66LIPFCVEE39 pKa = 3.48EE40 pKa = 4.47VLPGDD45 pKa = 3.63TFSIKK50 pKa = 8.91TSKK53 pKa = 10.8LIRR56 pKa = 11.84TQPLLTPLMDD66 pKa = 3.69QLYY69 pKa = 10.75LDD71 pKa = 4.24TYY73 pKa = 10.35WYY75 pKa = 9.69FVPNRR80 pKa = 11.84LIWEE84 pKa = 3.82HH85 pKa = 6.93WINFMGEE92 pKa = 4.08NTDD95 pKa = 3.7GSWIPEE101 pKa = 4.08TQYY104 pKa = 11.57SVPTVSAPSSTGWIEE119 pKa = 3.9HH120 pKa = 5.93TLADD124 pKa = 4.48YY125 pKa = 9.9MGLPVNVPSSSDD137 pKa = 3.31GVFSVSALPFRR148 pKa = 11.84AYY150 pKa = 10.59CKK152 pKa = 10.05IYY154 pKa = 10.65NDD156 pKa = 3.35WFRR159 pKa = 11.84DD160 pKa = 3.61EE161 pKa = 4.93NLCDD165 pKa = 3.72PAFLPLDD172 pKa = 3.89DD173 pKa = 4.02STRR176 pKa = 11.84VGSNGDD182 pKa = 3.7SLNDD186 pKa = 3.31VCLGGMPLKK195 pKa = 10.48SGKK198 pKa = 9.12IHH200 pKa = 7.77DD201 pKa = 4.59YY202 pKa = 10.78FSSCLPAPQKK212 pKa = 10.77GSPVSLGLEE221 pKa = 4.04SVYY224 pKa = 11.16GDD226 pKa = 3.06GFVPVFGNGLSLGLHH241 pKa = 5.12NSEE244 pKa = 4.39RR245 pKa = 11.84LFGISSSNSSGLLGASSNAVGNPLGTTTSSIVPIQNKK282 pKa = 10.25SIGVLTKK289 pKa = 10.59SGLDD293 pKa = 3.54AVGLPYY299 pKa = 10.51KK300 pKa = 10.1DD301 pKa = 3.41TGLVADD307 pKa = 4.81VSQSSLTVNSLRR319 pKa = 11.84YY320 pKa = 9.36AFAVQRR326 pKa = 11.84LLEE329 pKa = 4.37KK330 pKa = 10.4DD331 pKa = 3.05ARR333 pKa = 11.84GGSRR337 pKa = 11.84YY338 pKa = 9.2IEE340 pKa = 3.95QIKK343 pKa = 9.88SHH345 pKa = 6.73FGVTSPDD352 pKa = 2.98ARR354 pKa = 11.84LQRR357 pKa = 11.84SEE359 pKa = 4.06YY360 pKa = 10.84LGGNRR365 pKa = 11.84INININQVLNVAQAQKK381 pKa = 9.02TGSSEE386 pKa = 4.0GMLGNVAGYY395 pKa = 10.35SVTGDD400 pKa = 3.3SHH402 pKa = 8.24GDD404 pKa = 3.34FSKK407 pKa = 11.1SFTEE411 pKa = 3.58HH412 pKa = 6.5GYY414 pKa = 10.25IIGLMTVRR422 pKa = 11.84QDD424 pKa = 3.12NSYY427 pKa = 11.04CQGTDD432 pKa = 3.19RR433 pKa = 11.84FWKK436 pKa = 9.77RR437 pKa = 11.84KK438 pKa = 6.8TRR440 pKa = 11.84FDD442 pKa = 3.24YY443 pKa = 10.8YY444 pKa = 11.31YY445 pKa = 10.13PVFANIGEE453 pKa = 4.24QPVYY457 pKa = 10.31QSEE460 pKa = 4.41IYY462 pKa = 8.31EE463 pKa = 4.3TGSNSDD469 pKa = 2.83IVFGYY474 pKa = 9.6QEE476 pKa = 3.41AWADD480 pKa = 3.69YY481 pKa = 9.96RR482 pKa = 11.84FKK484 pKa = 10.56PSKK487 pKa = 8.03VTGMMRR493 pKa = 11.84NQLDD497 pKa = 3.26AWHH500 pKa = 6.86LADD503 pKa = 5.24KK504 pKa = 10.84YY505 pKa = 11.33NNPPVLGKK513 pKa = 8.1TWIEE517 pKa = 3.7SDD519 pKa = 3.46KK520 pKa = 11.65ANLDD524 pKa = 3.25RR525 pKa = 11.84ALAVTSSTADD535 pKa = 3.04QFFADD540 pKa = 4.04IFIEE544 pKa = 4.34NKK546 pKa = 8.05CTRR549 pKa = 11.84PMPMFSIPGLLDD561 pKa = 3.34HH562 pKa = 6.99NN563 pKa = 4.67

Molecular weight: 62.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1445

80

563

289.0

32.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.336 ± 1.792

1.038 ± 0.285

6.436 ± 1.046

5.19 ± 0.756

4.498 ± 0.684

6.92 ± 0.755

1.384 ± 0.414

5.19 ± 0.935

4.983 ± 0.599

8.235 ± 0.97

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.353 ± 0.273

6.505 ± 0.439

4.014 ± 0.717

3.875 ± 0.566

3.668 ± 0.534

11.003 ± 1.821

5.26 ± 0.606

6.09 ± 0.754

1.522 ± 0.167

4.498 ± 0.529
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski