Sedimentitalea nanhaiensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sedimentitalea

Average proteome isoelectric point is 6.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4762 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I6YJ17|A0A1I6YJ17_9RHOB NTE family protein OS=Sedimentitalea nanhaiensis OX=999627 GN=SAMN05216236_102244 PE=4 SV=1
MM1 pKa = 7.65SGIGNATRR9 pKa = 11.84YY10 pKa = 10.05VSASGDD16 pKa = 3.43AGIDD20 pKa = 3.88GILGDD25 pKa = 4.84RR26 pKa = 11.84AWDD29 pKa = 3.85DD30 pKa = 3.33AALLIGAPPTPDD42 pKa = 3.39VYY44 pKa = 11.33SGGYY48 pKa = 10.12GSGEE52 pKa = 4.21DD53 pKa = 3.74SGHH56 pKa = 5.2VQATAEE62 pKa = 4.34MTAMMQRR69 pKa = 11.84SLDD72 pKa = 3.73RR73 pKa = 11.84QAGSAADD80 pKa = 4.19DD81 pKa = 4.25GFSLEE86 pKa = 4.52GFTGQTVQQSTAASAHH102 pKa = 5.59IRR104 pKa = 11.84IAQTDD109 pKa = 4.26DD110 pKa = 4.02DD111 pKa = 4.56PFGYY115 pKa = 8.14GTAWAYY121 pKa = 10.53YY122 pKa = 8.72PSTGAASGDD131 pKa = 3.43VWFSTVSYY139 pKa = 10.56DD140 pKa = 3.15YY141 pKa = 10.04TYY143 pKa = 11.03PVAGNYY149 pKa = 10.41AYY151 pKa = 9.76VTMVHH156 pKa = 6.18EE157 pKa = 5.1LGHH160 pKa = 6.5ALGLEE165 pKa = 4.47HH166 pKa = 6.95GHH168 pKa = 6.33LTGSYY173 pKa = 8.25GTVPTSQDD181 pKa = 2.96SMEE184 pKa = 4.32YY185 pKa = 9.72TVMTYY190 pKa = 10.17RR191 pKa = 11.84SYY193 pKa = 11.03IGASPGNYY201 pKa = 9.77SNEE204 pKa = 3.74TWGYY208 pKa = 7.54AQSWMMLDD216 pKa = 3.66IAALQHH222 pKa = 5.93MYY224 pKa = 10.5GANFTTNSGDD234 pKa = 3.55TVYY237 pKa = 10.39KK238 pKa = 9.96WSPGSGATLVNGGIGIDD255 pKa = 3.49PGANRR260 pKa = 11.84IFATVWDD267 pKa = 4.31GGGTDD272 pKa = 3.75TFDD275 pKa = 3.4LSAYY279 pKa = 8.11ATALDD284 pKa = 3.69IDD286 pKa = 4.85LAPGAASVFDD296 pKa = 3.91SAQLARR302 pKa = 11.84LGPGEE307 pKa = 3.96YY308 pKa = 10.43ARR310 pKa = 11.84GNIYY314 pKa = 10.54NALLYY319 pKa = 10.82QGDD322 pKa = 3.79TRR324 pKa = 11.84SLIEE328 pKa = 4.27HH329 pKa = 6.23ATGGTGDD336 pKa = 4.55DD337 pKa = 3.59RR338 pKa = 11.84MSGNQADD345 pKa = 3.54NRR347 pKa = 11.84LRR349 pKa = 11.84GGDD352 pKa = 3.8GNDD355 pKa = 3.28TLMGQAGNDD364 pKa = 3.37TLMGQRR370 pKa = 11.84DD371 pKa = 4.11DD372 pKa = 5.73DD373 pKa = 3.82ILYY376 pKa = 10.97GNAGNDD382 pKa = 3.59TLKK385 pKa = 11.31GNGGNDD391 pKa = 3.26TLYY394 pKa = 11.41GNGDD398 pKa = 3.85DD399 pKa = 5.69DD400 pKa = 5.72LLIGHH405 pKa = 7.4GGHH408 pKa = 7.43DD409 pKa = 3.5SLYY412 pKa = 9.99GQDD415 pKa = 3.83GNDD418 pKa = 3.49VLRR421 pKa = 11.84GIAGQDD427 pKa = 3.29TLDD430 pKa = 4.32GGTGDD435 pKa = 5.66DD436 pKa = 3.59RR437 pKa = 11.84LFGNGGADD445 pKa = 3.54TLSGGAGQDD454 pKa = 3.48KK455 pKa = 10.88LFGAAGFDD463 pKa = 3.57MLYY466 pKa = 11.1GEE468 pKa = 5.43AGNDD472 pKa = 3.26QLTGGRR478 pKa = 11.84GADD481 pKa = 3.38QMTGGDD487 pKa = 3.62GADD490 pKa = 3.05VFRR493 pKa = 11.84FVAVNDD499 pKa = 3.94SPVGGGIDD507 pKa = 3.8TILDD511 pKa = 3.81FTPGSDD517 pKa = 4.42RR518 pKa = 11.84IDD520 pKa = 3.81LSGLAATPLGFQGFGNHH537 pKa = 6.17SGSAPDD543 pKa = 4.51VILQHH548 pKa = 6.19VSGDD552 pKa = 3.6TRR554 pKa = 11.84ILADD558 pKa = 4.43LDD560 pKa = 3.8GDD562 pKa = 3.96AQSDD566 pKa = 3.88LRR568 pKa = 11.84IDD570 pKa = 3.83LSGVLTLSGADD581 pKa = 3.96FIFF584 pKa = 4.49

Molecular weight: 60.33 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I7CMQ1|A0A1I7CMQ1_9RHOB Diguanylate cyclase/phosphodiesterase OS=Sedimentitalea nanhaiensis OX=999627 GN=SAMN05216236_1183 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84KK13 pKa = 8.96RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.62GFRR19 pKa = 11.84SRR21 pKa = 11.84MATKK25 pKa = 10.45AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 8.43EE41 pKa = 3.72LSAA44 pKa = 5.03

Molecular weight: 5.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4762

0

4762

1450164

28

2361

304.5

33.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.065 ± 0.049

0.938 ± 0.012

6.154 ± 0.031

5.448 ± 0.033

3.713 ± 0.024

8.634 ± 0.039

2.066 ± 0.018

5.26 ± 0.025

3.103 ± 0.03

10.03 ± 0.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.839 ± 0.017

2.693 ± 0.02

5.104 ± 0.025

3.475 ± 0.021

6.835 ± 0.032

5.249 ± 0.028

5.515 ± 0.022

7.248 ± 0.029

1.385 ± 0.014

2.248 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski