Chryseobacterium sp. 3008163

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium; unclassified Chryseobacterium

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3789 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3G2G9Q3|A0A3G2G9Q3_9FLAO Thioredoxin family protein OS=Chryseobacterium sp. 3008163 OX=2478663 GN=EAG08_10760 PE=4 SV=1
MM1 pKa = 7.39NSYY4 pKa = 9.92IKK6 pKa = 9.86KK7 pKa = 10.11IKK9 pKa = 8.71MKK11 pKa = 10.66KK12 pKa = 10.21NIFKK16 pKa = 10.52YY17 pKa = 10.41VLVPTMILCAFGINFFKK34 pKa = 10.39AQNWTTVWTEE44 pKa = 3.66NFNGLSYY51 pKa = 10.9SSSYY55 pKa = 10.77NNGVTGYY62 pKa = 9.34WNNSANPPQNSQINGAFEE80 pKa = 4.97ANPANNIVAGTTQVPSDD97 pKa = 3.43AAGGRR102 pKa = 11.84FLMFWTQGGVAIPASEE118 pKa = 3.71NVFFKK123 pKa = 10.22KK124 pKa = 9.36TMTVVPGKK132 pKa = 8.39TYY134 pKa = 10.29RR135 pKa = 11.84INYY138 pKa = 8.99RR139 pKa = 11.84FATLGAVPGTATNRR153 pKa = 11.84ANATFRR159 pKa = 11.84VSPQGNTTSFYY170 pKa = 8.76TSGMVVADD178 pKa = 3.32VNAWKK183 pKa = 10.35NVQYY187 pKa = 10.67EE188 pKa = 4.15FTVPSSVTSVDD199 pKa = 3.61MTWEE203 pKa = 4.07NTTKK207 pKa = 9.8STTGNDD213 pKa = 3.23FALDD217 pKa = 3.75DD218 pKa = 4.61LVLQEE223 pKa = 5.55AVDD226 pKa = 3.93SDD228 pKa = 4.03GDD230 pKa = 4.26GIPDD234 pKa = 4.85YY235 pKa = 11.2IDD237 pKa = 6.02DD238 pKa = 5.7DD239 pKa = 4.86DD240 pKa = 6.7DD241 pKa = 5.72NDD243 pKa = 5.25GILDD247 pKa = 3.72TAEE250 pKa = 4.44CGGGAIYY257 pKa = 10.22NYY259 pKa = 10.23SGFGIRR265 pKa = 11.84TISATQANLIGLTGNTYY282 pKa = 9.93TPTTIATNIIPGNDD296 pKa = 3.76ANHH299 pKa = 5.76MTTDD303 pKa = 3.48AARR306 pKa = 11.84NRR308 pKa = 11.84VLFANNIAQGSLFAYY323 pKa = 9.55QFSTNTVVNVGSGFLSSLGDD343 pKa = 3.62ASGGAAMYY351 pKa = 10.92NNDD354 pKa = 3.19YY355 pKa = 10.8FIYY358 pKa = 10.15DD359 pKa = 3.65DD360 pKa = 4.52TGTTSQGLWRR370 pKa = 11.84VTFNASGNASTLTKK384 pKa = 10.54VVDD387 pKa = 4.85PISGIDD393 pKa = 3.86LGDD396 pKa = 3.25IAINSSGMVYY406 pKa = 10.56VIGSTGALYY415 pKa = 10.86KK416 pKa = 10.55LDD418 pKa = 4.24LSSLNLSITTPSSAWISVGTTASASGTQLFFGANGDD454 pKa = 4.44LIGSNSGNLIRR465 pKa = 11.84IDD467 pKa = 3.78PNNAANLGTISTLTSGYY484 pKa = 9.18SWGDD488 pKa = 2.92ISEE491 pKa = 4.36APSVGFSCGTDD502 pKa = 3.13TDD504 pKa = 4.16SDD506 pKa = 4.6GIPNNLDD513 pKa = 3.53LDD515 pKa = 4.21SDD517 pKa = 4.41GDD519 pKa = 3.94GCPDD523 pKa = 3.19ARR525 pKa = 11.84EE526 pKa = 4.1GAGNFNPTTIASGTIASQTPNTNFGTAVSVTTGVPTAVGAGQSVGQSQDD575 pKa = 2.75SSKK578 pKa = 11.24NDD580 pKa = 3.64CLDD583 pKa = 3.32SDD585 pKa = 5.08GDD587 pKa = 5.0GLPDD591 pKa = 3.7WQDD594 pKa = 3.56LDD596 pKa = 4.64DD597 pKa = 6.11DD598 pKa = 4.68NDD600 pKa = 5.0GILDD604 pKa = 3.97TVEE607 pKa = 4.12CTPTYY612 pKa = 10.36LVRR615 pKa = 11.84PVTSSSVTADD625 pKa = 3.18KK626 pKa = 10.73PITVGTAPQIADD638 pKa = 3.55GEE640 pKa = 4.76GAGGSGDD647 pKa = 3.69GPFPYY652 pKa = 9.71WYY654 pKa = 9.14TNVPNLPIAFSMNMQSSSTIDD675 pKa = 3.22HH676 pKa = 6.16VKK678 pKa = 10.65LYY680 pKa = 10.71GPWGFNEE687 pKa = 4.35WIGNFTIEE695 pKa = 5.21LYY697 pKa = 10.8NAGNTLLGTEE707 pKa = 4.43NFVAPDD713 pKa = 3.69QYY715 pKa = 10.88TGTPIFSFTKK725 pKa = 9.8EE726 pKa = 3.9YY727 pKa = 10.73TNVARR732 pKa = 11.84VRR734 pKa = 11.84FTIVSSQGYY743 pKa = 7.73STVTPPRR750 pKa = 11.84ASVNEE755 pKa = 3.9IVFLDD760 pKa = 4.29LQPLTCDD767 pKa = 3.61TDD769 pKa = 3.56NDD771 pKa = 5.2GIPNHH776 pKa = 7.09LDD778 pKa = 3.34LDD780 pKa = 4.19SDD782 pKa = 4.4NDD784 pKa = 3.88GCLDD788 pKa = 4.14AMEE791 pKa = 5.03GDD793 pKa = 4.01EE794 pKa = 4.19NVTVNMLVNAASGLSVGTGSSASNQNLCASGTCVNANGVPTQVNSGGAADD844 pKa = 3.6IGGDD848 pKa = 3.43VGQGIGDD855 pKa = 3.89SQNALISSGCYY866 pKa = 8.82CYY868 pKa = 10.6KK869 pKa = 10.43PEE871 pKa = 4.22VVVAGNPNPVKK882 pKa = 10.7HH883 pKa = 6.72GITALKK889 pKa = 9.5RR890 pKa = 11.84ANSGTSDD897 pKa = 3.32WPVVRR902 pKa = 11.84QSAWTVLEE910 pKa = 4.27SKK912 pKa = 9.68TKK914 pKa = 10.27GFVLNRR920 pKa = 11.84MAFVDD925 pKa = 3.9ADD927 pKa = 4.29SNTATPTTPPLASIPAANYY946 pKa = 8.55VEE948 pKa = 4.61GMMVYY953 pKa = 9.04DD954 pKa = 4.7TVAKK958 pKa = 10.09CLKK961 pKa = 9.76IYY963 pKa = 10.91NGTIWSCFSTQTCPDD978 pKa = 3.14

Molecular weight: 102.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3G2G9K5|A0A3G2G9K5_9FLAO Uncharacterized protein OS=Chryseobacterium sp. 3008163 OX=2478663 GN=EAG08_13650 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPSEE10 pKa = 3.58RR11 pKa = 11.84KK12 pKa = 9.37KK13 pKa = 10.2RR14 pKa = 11.84NKK16 pKa = 9.71HH17 pKa = 4.09GFRR20 pKa = 11.84EE21 pKa = 4.33RR22 pKa = 11.84MSTPNGRR29 pKa = 11.84RR30 pKa = 11.84VLAARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.98GRR40 pKa = 11.84KK41 pKa = 8.81SLTVSSARR49 pKa = 11.84AKK51 pKa = 10.4RR52 pKa = 3.45

Molecular weight: 6.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3789

0

3789

1171329

25

2833

309.1

34.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.004 ± 0.04

0.729 ± 0.012

5.403 ± 0.03

6.56 ± 0.05

5.52 ± 0.034

6.233 ± 0.044

1.637 ± 0.016

8.035 ± 0.043

8.404 ± 0.046

8.966 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.315 ± 0.02

6.677 ± 0.049

3.329 ± 0.022

3.53 ± 0.024

3.069 ± 0.024

6.765 ± 0.032

5.653 ± 0.044

5.933 ± 0.031

1.061 ± 0.016

4.178 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski