Candida viswanathii

Taxonomy: cellular organisms;

Average proteome isoelectric point is 6.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10576 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A367YFG1|A0A367YFG1_9ASCO Protein BIM1 OS=Candida viswanathii OX=5486 GN=BIM1_1 PE=3 SV=1
MM1 pKa = 8.11DD2 pKa = 5.97ANLEE6 pKa = 4.05NTKK9 pKa = 8.51MWEE12 pKa = 4.35SVDD15 pKa = 4.21HH16 pKa = 6.71SLTSNLLSRR25 pKa = 11.84ITSTVEE31 pKa = 3.46CTICSEE37 pKa = 3.86IMAVPVTAEE46 pKa = 4.35CGHH49 pKa = 5.91SFCYY53 pKa = 10.36DD54 pKa = 4.35CIYY57 pKa = 10.84QWFSNKK63 pKa = 8.75VNCPTCRR70 pKa = 11.84HH71 pKa = 5.95EE72 pKa = 5.0IEE74 pKa = 4.73NKK76 pKa = 7.93PTLNLQLKK84 pKa = 7.16EE85 pKa = 3.8ICKK88 pKa = 10.25NLLDD92 pKa = 4.43MIIDD96 pKa = 3.67SRR98 pKa = 11.84LEE100 pKa = 3.64NHH102 pKa = 6.46EE103 pKa = 3.84VLKK106 pKa = 10.49NHH108 pKa = 6.66KK109 pKa = 10.24LEE111 pKa = 4.6SEE113 pKa = 4.03NNYY116 pKa = 10.32NLDD119 pKa = 3.33VRR121 pKa = 11.84NKK123 pKa = 10.71SLFGDD128 pKa = 4.45LFNSTVTLIDD138 pKa = 3.58NSDD141 pKa = 3.35GVPRR145 pKa = 11.84CGNCHH150 pKa = 5.93WEE152 pKa = 3.82AHH154 pKa = 6.1GPVCQHH160 pKa = 6.39CGTRR164 pKa = 11.84FRR166 pKa = 11.84VNPHH170 pKa = 5.02SRR172 pKa = 11.84FGGGYY177 pKa = 10.33DD178 pKa = 4.7DD179 pKa = 6.67DD180 pKa = 6.58DD181 pKa = 7.03DD182 pKa = 4.9EE183 pKa = 7.0DD184 pKa = 4.23EE185 pKa = 5.58EE186 pKa = 5.02SFQDD190 pKa = 4.35VIAGYY195 pKa = 9.95HH196 pKa = 6.18RR197 pKa = 11.84EE198 pKa = 3.85LDD200 pKa = 3.77TYY202 pKa = 11.3DD203 pKa = 4.37SEE205 pKa = 6.08DD206 pKa = 3.47SFIDD210 pKa = 3.14SRR212 pKa = 11.84TAHH215 pKa = 7.29EE216 pKa = 4.86IPVDD220 pKa = 3.63MSDD223 pKa = 3.88EE224 pKa = 4.64DD225 pKa = 4.91DD226 pKa = 4.56VDD228 pKa = 5.24DD229 pKa = 5.35EE230 pKa = 4.99GDD232 pKa = 3.57NEE234 pKa = 4.94RR235 pKa = 11.84GDD237 pKa = 4.6DD238 pKa = 4.61SDD240 pKa = 5.62DD241 pKa = 4.21FSDD244 pKa = 4.12NYY246 pKa = 10.76EE247 pKa = 4.13GDD249 pKa = 3.73SADD252 pKa = 3.46GDD254 pKa = 4.26RR255 pKa = 11.84NNSLLSADD263 pKa = 4.29DD264 pKa = 4.92DD265 pKa = 4.09YY266 pKa = 12.1HH267 pKa = 7.37EE268 pKa = 5.22LVLNGHH274 pKa = 7.08PADD277 pKa = 3.52EE278 pKa = 4.17WHH280 pKa = 6.54GFEE283 pKa = 4.68SASSSMIDD291 pKa = 2.82RR292 pKa = 11.84ALSNDD297 pKa = 2.84SDD299 pKa = 4.4YY300 pKa = 11.21QRR302 pKa = 11.84HH303 pKa = 5.09IHH305 pKa = 7.5DD306 pKa = 5.8DD307 pKa = 3.53NDD309 pKa = 4.29DD310 pKa = 4.14DD311 pKa = 6.13DD312 pKa = 5.52EE313 pKa = 4.62EE314 pKa = 4.96SHH316 pKa = 5.35TQEE319 pKa = 5.27IEE321 pKa = 3.75DD322 pKa = 3.89DD323 pKa = 3.75HH324 pKa = 7.47PEE326 pKa = 4.24RR327 pKa = 11.84YY328 pKa = 9.38HH329 pKa = 6.91LSSPSSEE336 pKa = 4.64NIIQLSGNDD345 pKa = 3.45DD346 pKa = 3.45DD347 pKa = 5.98SYY349 pKa = 11.8YY350 pKa = 11.01DD351 pKa = 3.61SEE353 pKa = 4.64DD354 pKa = 3.25VRR356 pKa = 11.84EE357 pKa = 4.52ALDD360 pKa = 4.73DD361 pKa = 4.44LDD363 pKa = 4.28NVEE366 pKa = 5.65ALLSYY371 pKa = 11.28DD372 pKa = 3.79NLIEE376 pKa = 4.83DD377 pKa = 3.83VSDD380 pKa = 4.94DD381 pKa = 3.92GLEE384 pKa = 4.3DD385 pKa = 5.04GYY387 pKa = 11.39DD388 pKa = 3.5SSGMVHH394 pKa = 7.1ALEE397 pKa = 5.69DD398 pKa = 5.28DD399 pKa = 3.8INLSDD404 pKa = 5.32DD405 pKa = 3.71YY406 pKa = 12.06

Molecular weight: 46.08 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A367XLL5|A0A367XLL5_9ASCO Vacuolar protein sorting-associated protein 33 OS=Candida viswanathii OX=5486 GN=VPS33_1 PE=3 SV=1
MM1 pKa = 7.74TIRR4 pKa = 11.84EE5 pKa = 4.2KK6 pKa = 10.8RR7 pKa = 11.84SNCSVFVPSLEE18 pKa = 4.56TKK20 pKa = 10.43CLLYY24 pKa = 9.78LTQSLCNPGGKK35 pKa = 8.89IGLFNVFANHH45 pKa = 6.56RR46 pKa = 11.84SMARR50 pKa = 11.84SNSLFGKK57 pKa = 9.11VRR59 pKa = 11.84WRR61 pKa = 11.84NGG63 pKa = 2.83

Molecular weight: 7.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10576

0

10576

5109780

25

4929

483.1

54.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.977 ± 0.026

1.071 ± 0.008

6.057 ± 0.022

6.768 ± 0.033

4.386 ± 0.018

5.434 ± 0.028

2.145 ± 0.012

6.274 ± 0.022

6.821 ± 0.031

9.508 ± 0.033

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.848 ± 0.01

5.449 ± 0.022

4.892 ± 0.028

4.179 ± 0.026

4.174 ± 0.018

8.297 ± 0.037

6.081 ± 0.042

6.097 ± 0.025

1.016 ± 0.008

3.527 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski