Yangia sp. CCB-MM3

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Salipiger; unclassified Salipiger

Average proteome isoelectric point is 6.07

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4896 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1B1PYL8|A0A1B1PYL8_9RHOB Uncharacterized protein OS=Yangia sp. CCB-MM3 OX=1792508 GN=AYJ57_24555 PE=4 SV=1
MM1 pKa = 7.53AADD4 pKa = 4.83FDD6 pKa = 4.6DD7 pKa = 6.06LDD9 pKa = 3.67VLAQQEE15 pKa = 4.28IAASEE20 pKa = 4.33SATNGNGANSLRR32 pKa = 11.84NLIEE36 pKa = 4.44RR37 pKa = 11.84GVLDD41 pKa = 3.61EE42 pKa = 4.44SGRR45 pKa = 11.84EE46 pKa = 3.88IGSEE50 pKa = 4.2SASPAPPGEE59 pKa = 4.51AGSGVLDD66 pKa = 3.48IFVEE70 pKa = 4.68DD71 pKa = 4.1GLLPGIRR78 pKa = 11.84SALEE82 pKa = 3.65QYY84 pKa = 10.61ISDD87 pKa = 4.31IEE89 pKa = 4.24LEE91 pKa = 4.69GYY93 pKa = 7.24QVRR96 pKa = 11.84VVEE99 pKa = 4.52FDD101 pKa = 3.42GSAEE105 pKa = 3.95EE106 pKa = 4.63LRR108 pKa = 11.84SEE110 pKa = 5.62LEE112 pKa = 4.01ARR114 pKa = 11.84WLNDD118 pKa = 3.12GLEE121 pKa = 4.36GALFVGDD128 pKa = 5.33LPVQYY133 pKa = 10.27FKK135 pKa = 11.28SYY137 pKa = 11.14DD138 pKa = 3.52GYY140 pKa = 11.31DD141 pKa = 3.13ADD143 pKa = 4.35GQLVRR148 pKa = 11.84YY149 pKa = 8.34PHH151 pKa = 7.16DD152 pKa = 4.61LYY154 pKa = 11.61FMDD157 pKa = 5.8LDD159 pKa = 3.91GSYY162 pKa = 11.13SFNASGADD170 pKa = 3.29AHH172 pKa = 6.95VDD174 pKa = 3.14GDD176 pKa = 4.01GDD178 pKa = 4.05VAPEE182 pKa = 4.06IYY184 pKa = 10.23VSRR187 pKa = 11.84LAASQLGGLSSSSEE201 pKa = 4.11TEE203 pKa = 4.34LINSYY208 pKa = 8.55FAKK211 pKa = 10.0LHH213 pKa = 5.15EE214 pKa = 4.25VRR216 pKa = 11.84AAGRR220 pKa = 11.84QYY222 pKa = 9.76QEE224 pKa = 3.53RR225 pKa = 11.84AIWFADD231 pKa = 3.77NDD233 pKa = 4.06WAPYY237 pKa = 9.57TGDD240 pKa = 3.97LEE242 pKa = 4.78SLTGLYY248 pKa = 10.43SEE250 pKa = 4.58VTDD253 pKa = 4.53IRR255 pKa = 11.84ALDD258 pKa = 3.69EE259 pKa = 4.31TTVANYY265 pKa = 7.79EE266 pKa = 3.84AALQEE271 pKa = 4.31DD272 pKa = 5.35VEE274 pKa = 4.47TLIQQIHH281 pKa = 6.0AWSSGLSISSPGGGLVFSADD301 pKa = 3.51VVDD304 pKa = 6.21LNAQPAFINLFNCSSADD321 pKa = 3.4FTQWSNLASTYY332 pKa = 10.88VFLSDD337 pKa = 4.36GVLNTVGSTKK347 pKa = 10.06TGSMLNFADD356 pKa = 5.76FYY358 pKa = 10.64RR359 pKa = 11.84PQSAGLTLGQSFLDD373 pKa = 3.65WFEE376 pKa = 3.78MHH378 pKa = 7.11AAATDD383 pKa = 3.77EE384 pKa = 4.79PALDD388 pKa = 3.8WKK390 pKa = 11.0VDD392 pKa = 2.9WHH394 pKa = 7.83YY395 pKa = 11.76GMTMQGDD402 pKa = 4.02PTMGPSVLRR411 pKa = 11.84AILPVITGTDD421 pKa = 3.22CRR423 pKa = 11.84DD424 pKa = 3.48RR425 pKa = 11.84LVGTDD430 pKa = 3.67DD431 pKa = 4.25AEE433 pKa = 5.08LILGLGGRR441 pKa = 11.84DD442 pKa = 3.81RR443 pKa = 11.84ITALAGDD450 pKa = 3.93DD451 pKa = 4.45RR452 pKa = 11.84IFGGAGRR459 pKa = 11.84DD460 pKa = 3.65TIRR463 pKa = 11.84AGDD466 pKa = 3.89GDD468 pKa = 4.38DD469 pKa = 5.52FIDD472 pKa = 4.25GGSGRR477 pKa = 11.84DD478 pKa = 3.54VIYY481 pKa = 10.17TGAGADD487 pKa = 3.42TVVISDD493 pKa = 4.01LRR495 pKa = 11.84GFDD498 pKa = 3.34KK499 pKa = 11.13LYY501 pKa = 11.04DD502 pKa = 3.71FDD504 pKa = 4.98IGVDD508 pKa = 3.46TLVIDD513 pKa = 4.46IEE515 pKa = 5.06GITPDD520 pKa = 4.97DD521 pKa = 3.81LSLNKK526 pKa = 8.57WRR528 pKa = 11.84LMASVDD534 pKa = 3.88GCWTKK539 pKa = 10.79LAFIPNAYY547 pKa = 9.99RR548 pKa = 11.84EE549 pKa = 4.37GATLAEE555 pKa = 4.32LLQPEE560 pKa = 4.7VPGDD564 pKa = 3.47ASTLYY569 pKa = 9.7TLDD572 pKa = 2.96VGSEE576 pKa = 3.98VRR578 pKa = 11.84GTLDD582 pKa = 3.62FLEE585 pKa = 4.49DD586 pKa = 3.79RR587 pKa = 11.84DD588 pKa = 3.86WFGVEE593 pKa = 3.53LRR595 pKa = 11.84AGVTYY600 pKa = 10.73RR601 pKa = 11.84FDD603 pKa = 3.71LVRR606 pKa = 11.84DD607 pKa = 3.82EE608 pKa = 5.37ASSNPLPDD616 pKa = 4.07PYY618 pKa = 10.82FRR620 pKa = 11.84LYY622 pKa = 10.67DD623 pKa = 3.85AEE625 pKa = 4.42GQLLAANDD633 pKa = 4.78DD634 pKa = 4.03YY635 pKa = 12.13SSLNSQLFYY644 pKa = 11.06TPTEE648 pKa = 4.04DD649 pKa = 4.01ARR651 pKa = 11.84VFAAAGAYY659 pKa = 10.01ADD661 pKa = 4.36AYY663 pKa = 9.63EE664 pKa = 4.44GGYY667 pKa = 9.97VLSLAEE673 pKa = 4.44AADD676 pKa = 4.09FDD678 pKa = 4.79AVPGDD683 pKa = 3.76EE684 pKa = 4.38STTAEE689 pKa = 4.19IEE691 pKa = 4.37VGGAAHH697 pKa = 6.93GRR699 pKa = 11.84IDD701 pKa = 4.76YY702 pKa = 10.39PGDD705 pKa = 4.03DD706 pKa = 3.2DD707 pKa = 3.79WFRR710 pKa = 11.84VEE712 pKa = 4.85LRR714 pKa = 11.84GGTTYY719 pKa = 10.95RR720 pKa = 11.84FYY722 pKa = 11.52LSAEE726 pKa = 4.3TGSDD730 pKa = 3.5SPLWDD735 pKa = 4.03PYY737 pKa = 10.97FYY739 pKa = 10.75LYY741 pKa = 10.64DD742 pKa = 4.25AEE744 pKa = 5.37GEE746 pKa = 4.31LIGANDD752 pKa = 3.82DD753 pKa = 4.05TGDD756 pKa = 4.16SLNSSYY762 pKa = 11.15QYY764 pKa = 10.86TPDD767 pKa = 3.23SDD769 pKa = 3.84EE770 pKa = 4.92LVFASARR777 pKa = 11.84AFGDD781 pKa = 3.67YY782 pKa = 9.42GTGDD786 pKa = 3.66YY787 pKa = 10.71VLSVAEE793 pKa = 4.5KK794 pKa = 9.57EE795 pKa = 4.08LGLFGMLQDD804 pKa = 3.54VPAYY808 pKa = 9.75NWYY811 pKa = 9.74HH812 pKa = 5.85GCSPTTGGSIIGYY825 pKa = 8.56WDD827 pKa = 3.75LNGYY831 pKa = 8.92PDD833 pKa = 5.23LFDD836 pKa = 4.81AEE838 pKa = 4.4GWEE841 pKa = 4.46QISTTPSVQDD851 pKa = 3.69QISSPAHH858 pKa = 4.97NAKK861 pKa = 10.24YY862 pKa = 10.59DD863 pKa = 3.8PTPDD867 pKa = 3.67NPTLPVPPYY876 pKa = 10.11TSIADD881 pKa = 3.67FMGTSVDD888 pKa = 3.49PLGYY892 pKa = 10.41GSTYY896 pKa = 10.57VSNFDD901 pKa = 3.08GAYY904 pKa = 9.62RR905 pKa = 11.84GYY907 pKa = 9.9PALTGSAFSSHH918 pKa = 5.63TLYY921 pKa = 11.16NSDD924 pKa = 3.13TGEE927 pKa = 4.3PGGSLWEE934 pKa = 4.25EE935 pKa = 4.03YY936 pKa = 10.34VAEE939 pKa = 4.34IDD941 pKa = 3.25AGRR944 pKa = 11.84PVAMTVDD951 pKa = 3.87SNGDD955 pKa = 3.67GITDD959 pKa = 3.52HH960 pKa = 7.07SIPGIGYY967 pKa = 8.19EE968 pKa = 4.56DD969 pKa = 4.04RR970 pKa = 11.84GADD973 pKa = 3.91GVWYY977 pKa = 9.68AAYY980 pKa = 6.51TTWSEE985 pKa = 4.22SEE987 pKa = 4.08TPIWRR992 pKa = 11.84EE993 pKa = 3.7FRR995 pKa = 11.84PTAPGAAWAVSYY1007 pKa = 8.71LTFVLPEE1014 pKa = 4.09GAEE1017 pKa = 3.92AAPTGDD1023 pKa = 4.4LALAMAGGAEE1033 pKa = 4.84PITSEE1038 pKa = 3.91PLTFTEE1044 pKa = 4.49EE1045 pKa = 3.76LHH1047 pKa = 6.63EE1048 pKa = 4.2IAVALEE1054 pKa = 3.69IDD1056 pKa = 4.14GEE1058 pKa = 4.27LGAAEE1063 pKa = 4.73EE1064 pKa = 4.75KK1065 pKa = 10.66ILMQAKK1071 pKa = 10.27LIDD1074 pKa = 3.7FAQPFDD1080 pKa = 4.03DD1081 pKa = 4.87LFVVV1085 pKa = 4.13

Molecular weight: 117.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1B1PN51|A0A1B1PN51_9RHOB Uncharacterized protein OS=Yangia sp. CCB-MM3 OX=1792508 GN=AYJ57_06330 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.31AGRR28 pKa = 11.84AILNARR34 pKa = 11.84RR35 pKa = 11.84GRR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.06KK41 pKa = 10.57LSAA44 pKa = 4.03

Molecular weight: 5.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4896

0

4896

1570501

30

5754

320.8

34.72

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.588 ± 0.043

0.901 ± 0.012

5.742 ± 0.04

6.359 ± 0.037

3.67 ± 0.024

8.914 ± 0.034

1.991 ± 0.02

4.881 ± 0.027

2.941 ± 0.029

10.479 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.768 ± 0.02

2.333 ± 0.019

5.237 ± 0.025

3.182 ± 0.019

6.657 ± 0.046

5.303 ± 0.031

5.307 ± 0.031

7.142 ± 0.032

1.388 ± 0.014

2.215 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski