Capybara microvirus Cap3_SP_586

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W8X8|A0A4P8W8X8_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_586 OX=2585479 PE=4 SV=1
MM1 pKa = 7.32FRR3 pKa = 11.84NFCDD7 pKa = 3.3IILRR11 pKa = 11.84IMPSVSPQVFSSTSITQSGMDD32 pKa = 3.22VSLRR36 pKa = 11.84DD37 pKa = 3.83MISKK41 pKa = 9.8YY42 pKa = 7.26VTYY45 pKa = 10.14GVPIPDD51 pKa = 3.33VGGEE55 pKa = 4.2YY56 pKa = 10.81YY57 pKa = 11.03GDD59 pKa = 3.91DD60 pKa = 3.91TPDD63 pKa = 3.26VNPFGFDD70 pKa = 3.64LEE72 pKa = 4.88DD73 pKa = 3.7SPKK76 pKa = 10.06VRR78 pKa = 11.84QDD80 pKa = 3.45YY81 pKa = 11.16INAVNNAQALQNEE94 pKa = 4.56QTSQNASAMSPQNAQLAEE112 pKa = 4.17KK113 pKa = 10.67DD114 pKa = 3.73RR115 pKa = 11.84VNVASEE121 pKa = 4.08RR122 pKa = 11.84ASEE125 pKa = 3.99ASEE128 pKa = 3.82RR129 pKa = 11.84ASDD132 pKa = 3.16ITAPLEE138 pKa = 3.93

Molecular weight: 15.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W555|A0A4P8W555_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_586 OX=2585479 PE=3 SV=1
MM1 pKa = 7.11MCQSPIHH8 pKa = 6.42LRR10 pKa = 11.84DD11 pKa = 3.38GPLRR15 pKa = 11.84FVPCGKK21 pKa = 9.87CANCLKK27 pKa = 10.27RR28 pKa = 11.84KK29 pKa = 8.81HH30 pKa = 6.57LEE32 pKa = 3.6WQFRR36 pKa = 11.84LQRR39 pKa = 11.84EE40 pKa = 4.27EE41 pKa = 4.78RR42 pKa = 11.84SSKK45 pKa = 10.43CCYY48 pKa = 10.18CVTLTYY54 pKa = 10.77NEE56 pKa = 4.54SNVPISWTSKK66 pKa = 10.34NEE68 pKa = 3.69GGNLIFTLCKK78 pKa = 10.14SDD80 pKa = 3.27VQAWLKK86 pKa = 10.48RR87 pKa = 11.84IRR89 pKa = 11.84HH90 pKa = 5.3YY91 pKa = 10.85LPKK94 pKa = 10.04FRR96 pKa = 11.84YY97 pKa = 8.97YY98 pKa = 10.98LVGEE102 pKa = 4.48YY103 pKa = 8.36GTKK106 pKa = 8.32TLRR109 pKa = 11.84PHH111 pKa = 4.87YY112 pKa = 10.07HH113 pKa = 6.13VILFFSDD120 pKa = 3.63YY121 pKa = 11.17CNLQSVFDD129 pKa = 3.55ITFKK133 pKa = 10.71YY134 pKa = 8.17WCKK137 pKa = 10.87SDD139 pKa = 3.93IEE141 pKa = 4.25GHH143 pKa = 5.95KK144 pKa = 10.49VDD146 pKa = 4.19IVSPQAINYY155 pKa = 7.39CSKK158 pKa = 10.62YY159 pKa = 8.17VQKK162 pKa = 10.98LMSLPSWLDD171 pKa = 3.32CQPPFALMSRR181 pKa = 11.84KK182 pKa = 9.47PGIGDD187 pKa = 3.38SFIRR191 pKa = 11.84NEE193 pKa = 3.78ATATEE198 pKa = 4.11ILSNYY203 pKa = 8.58RR204 pKa = 11.84SQVFFDD210 pKa = 3.18EE211 pKa = 4.48GHH213 pKa = 6.38RR214 pKa = 11.84VTLPRR219 pKa = 11.84FYY221 pKa = 10.39RR222 pKa = 11.84DD223 pKa = 3.56KK224 pKa = 11.56LFIDD228 pKa = 4.07NLDD231 pKa = 3.39KK232 pKa = 11.03QIYY235 pKa = 8.91RR236 pKa = 11.84DD237 pKa = 3.09KK238 pKa = 10.82CKK240 pKa = 10.37RR241 pKa = 11.84YY242 pKa = 9.46FDD244 pKa = 4.61NYY246 pKa = 8.94TNQNFANYY254 pKa = 8.17VNKK257 pKa = 10.3FGFHH261 pKa = 4.88QACKK265 pKa = 10.02FFSDD269 pKa = 3.76MPKK272 pKa = 10.56NDD274 pKa = 3.57LQKK277 pKa = 10.96LIRR280 pKa = 11.84FFKK283 pKa = 10.76NKK285 pKa = 9.39QKK287 pKa = 11.05LL288 pKa = 3.49

Molecular weight: 34.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1364

79

553

272.8

31.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.158 ± 1.379

1.613 ± 0.997

5.792 ± 0.554

4.619 ± 0.399

6.158 ± 0.975

5.425 ± 0.987

1.906 ± 0.336

5.865 ± 0.322

6.158 ± 0.938

9.238 ± 0.788

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.493 ± 0.515

6.965 ± 1.087

4.692 ± 0.513

5.059 ± 0.433

4.545 ± 0.629

7.625 ± 0.825

5.059 ± 0.647

4.692 ± 0.509

1.246 ± 0.209

4.692 ± 0.426
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski