Citrus yellow vein-associated virus

Taxonomy: Viruses; unclassified viruses

Average proteome isoelectric point is 8.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S4TYN1|S4TYN1_9VIRU RNA-dependent RNA polymerase OS=Citrus yellow vein-associated virus OX=1297894 GN=RdRp PE=4 SV=1
MM1 pKa = 7.98DD2 pKa = 5.76PSSLPRR8 pKa = 11.84ACWHH12 pKa = 6.7HH13 pKa = 5.69ARR15 pKa = 11.84QVFRR19 pKa = 11.84ASTSFSRR26 pKa = 11.84EE27 pKa = 3.47VVRR30 pKa = 11.84AARR33 pKa = 11.84RR34 pKa = 11.84WVTMPTSRR42 pKa = 11.84HH43 pKa = 5.9AYY45 pKa = 10.06DD46 pKa = 4.59FSTSLGIVIAEE57 pKa = 3.76PAARR61 pKa = 11.84LRR63 pKa = 11.84RR64 pKa = 11.84RR65 pKa = 11.84LPSVRR70 pKa = 11.84KK71 pKa = 8.98CAEE74 pKa = 3.73KK75 pKa = 10.7LVVHH79 pKa = 6.16KK80 pKa = 10.82QVDD83 pKa = 3.81TLVDD87 pKa = 3.92EE88 pKa = 4.65WCSGIPNPDD97 pKa = 2.89IVEE100 pKa = 4.32VGWALRR106 pKa = 11.84LRR108 pKa = 11.84DD109 pKa = 3.99RR110 pKa = 11.84FGLPPASEE118 pKa = 4.22PTRR121 pKa = 11.84LSGEE125 pKa = 3.92RR126 pKa = 11.84WVLKK130 pKa = 9.92QLNGVDD136 pKa = 3.9PEE138 pKa = 4.35SWNADD143 pKa = 3.26LGRR146 pKa = 11.84SVHH149 pKa = 5.76IQGDD153 pKa = 3.93YY154 pKa = 10.82APGRR158 pKa = 11.84NAHH161 pKa = 6.39IAQVAATLWLTRR173 pKa = 11.84TLHH176 pKa = 6.64DD177 pKa = 3.77KK178 pKa = 10.98ALARR182 pKa = 11.84HH183 pKa = 5.48QGFSRR188 pKa = 11.84FAVIGVDD195 pKa = 3.42GLEE198 pKa = 4.24AKK200 pKa = 10.01AVPLASGLRR209 pKa = 11.84LLPVPRR215 pKa = 11.84PGQSRR220 pKa = 11.84RR221 pKa = 11.84LSQTLLLPTPRR232 pKa = 11.84AQFVNHH238 pKa = 6.64ACSANNLGRR247 pKa = 11.84VMTTRR252 pKa = 11.84VLQYY256 pKa = 10.5KK257 pKa = 10.18GRR259 pKa = 11.84DD260 pKa = 3.56PILPSSEE267 pKa = 3.61ALHH270 pKa = 6.2RR271 pKa = 11.84LNLRR275 pKa = 11.84IAEE278 pKa = 4.81LYY280 pKa = 9.94RR281 pKa = 11.84SRR283 pKa = 11.84PSTVYY288 pKa = 9.2PLSYY292 pKa = 10.7EE293 pKa = 4.16GFLNCYY299 pKa = 8.89EE300 pKa = 3.94GRR302 pKa = 11.84QRR304 pKa = 11.84TRR306 pKa = 11.84YY307 pKa = 8.48AQAVEE312 pKa = 3.68QLMRR316 pKa = 11.84STLEE320 pKa = 4.01PKK322 pKa = 10.12DD323 pKa = 3.55ARR325 pKa = 11.84VEE327 pKa = 4.07TFIKK331 pKa = 10.67NEE333 pKa = 3.87KK334 pKa = 9.72FDD336 pKa = 3.53WALKK340 pKa = 10.68GEE342 pKa = 4.35EE343 pKa = 4.24ADD345 pKa = 3.84PRR347 pKa = 11.84AIQPRR352 pKa = 11.84KK353 pKa = 8.79PKK355 pKa = 10.37YY356 pKa = 8.89LAEE359 pKa = 4.02VGRR362 pKa = 11.84WFKK365 pKa = 10.32PLEE368 pKa = 4.24RR369 pKa = 11.84IIYY372 pKa = 9.51KK373 pKa = 10.36DD374 pKa = 3.27LSKK377 pKa = 10.93RR378 pKa = 11.84LYY380 pKa = 10.97GEE382 pKa = 4.06GAEE385 pKa = 4.01PCIAKK390 pKa = 10.12GLNALEE396 pKa = 4.46SGATLRR402 pKa = 11.84RR403 pKa = 11.84KK404 pKa = 8.47WEE406 pKa = 4.06KK407 pKa = 10.23FSSPVCVSLDD417 pKa = 3.2ASRR420 pKa = 11.84FDD422 pKa = 3.5LHH424 pKa = 8.4VSVGMLKK431 pKa = 9.18FTHH434 pKa = 6.73KK435 pKa = 10.79LYY437 pKa = 10.56DD438 pKa = 4.02YY439 pKa = 9.48YY440 pKa = 11.19CKK442 pKa = 10.69SPTLQRR448 pKa = 11.84YY449 pKa = 7.53LKK451 pKa = 8.41WTLRR455 pKa = 11.84NHH457 pKa = 6.55GVASCKK463 pKa = 9.82EE464 pKa = 3.64LSYY467 pKa = 10.5EE468 pKa = 4.07YY469 pKa = 10.27EE470 pKa = 4.18VVGRR474 pKa = 11.84RR475 pKa = 11.84MSGDD479 pKa = 3.17MDD481 pKa = 3.91TALGNCVIMSILTWFMLSEE500 pKa = 4.28LGIKK504 pKa = 10.13HH505 pKa = 6.2EE506 pKa = 4.74LFDD509 pKa = 5.42NGDD512 pKa = 3.56DD513 pKa = 4.05CLFICEE519 pKa = 4.39SHH521 pKa = 7.08DD522 pKa = 3.65VPSPEE527 pKa = 5.54VITNWFSDD535 pKa = 3.25FGFVVRR541 pKa = 11.84LEE543 pKa = 4.33GVTSVFEE550 pKa = 4.61RR551 pKa = 11.84IEE553 pKa = 4.15FCQTSPVWTEE563 pKa = 4.19RR564 pKa = 11.84GWLMCRR570 pKa = 11.84NIKK573 pKa = 10.27SLSKK577 pKa = 10.89DD578 pKa = 3.19LTNVNSCTGSTIEE591 pKa = 3.89YY592 pKa = 6.55THH594 pKa = 6.68WLKK597 pKa = 11.0AVGKK601 pKa = 9.92CGSILNAGVPIFQSFHH617 pKa = 6.42NMLEE621 pKa = 4.05RR622 pKa = 11.84LGTNSRR628 pKa = 11.84IDD630 pKa = 2.92RR631 pKa = 11.84GVFFKK636 pKa = 11.0SGLVNLIRR644 pKa = 11.84GMDD647 pKa = 3.63RR648 pKa = 11.84QPDD651 pKa = 3.44VDD653 pKa = 3.35ITTSARR659 pKa = 11.84LSFEE663 pKa = 4.05VAFGITPGMQLAIEE677 pKa = 4.82RR678 pKa = 11.84YY679 pKa = 8.31YY680 pKa = 11.29DD681 pKa = 3.5SVMGSLSKK689 pKa = 10.56IEE691 pKa = 4.06TTKK694 pKa = 10.43WPIEE698 pKa = 3.71LRR700 pKa = 11.84KK701 pKa = 9.8EE702 pKa = 4.1YY703 pKa = 10.54EE704 pKa = 4.77HH705 pKa = 7.63GSEE708 pKa = 3.94WYY710 pKa = 9.73EE711 pKa = 3.81DD712 pKa = 3.71LGVLGG717 pKa = 4.78

Molecular weight: 81.44 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S4TYN1|S4TYN1_9VIRU RNA-dependent RNA polymerase OS=Citrus yellow vein-associated virus OX=1297894 GN=RdRp PE=4 SV=1
MM1 pKa = 7.98DD2 pKa = 5.76PSSLPRR8 pKa = 11.84ACWHH12 pKa = 6.7HH13 pKa = 5.69ARR15 pKa = 11.84QVFRR19 pKa = 11.84ASTSFSRR26 pKa = 11.84EE27 pKa = 3.47VVRR30 pKa = 11.84AARR33 pKa = 11.84RR34 pKa = 11.84WVTMPTSRR42 pKa = 11.84HH43 pKa = 5.9AYY45 pKa = 10.06DD46 pKa = 4.59FSTSLGIVIAEE57 pKa = 3.76PAARR61 pKa = 11.84LRR63 pKa = 11.84RR64 pKa = 11.84RR65 pKa = 11.84LPSVRR70 pKa = 11.84KK71 pKa = 8.98CAEE74 pKa = 3.73KK75 pKa = 10.7LVVHH79 pKa = 6.16KK80 pKa = 10.82QVDD83 pKa = 3.81TLVDD87 pKa = 3.92EE88 pKa = 4.65WCSGIPNPDD97 pKa = 2.89IVEE100 pKa = 4.32VGWALRR106 pKa = 11.84LRR108 pKa = 11.84DD109 pKa = 3.99RR110 pKa = 11.84FGLPPASEE118 pKa = 4.22PTRR121 pKa = 11.84LSGEE125 pKa = 3.92RR126 pKa = 11.84WVLKK130 pKa = 9.92QLNGVDD136 pKa = 3.9PEE138 pKa = 4.35SWNADD143 pKa = 3.26LGRR146 pKa = 11.84SVHH149 pKa = 5.76IQGDD153 pKa = 3.93YY154 pKa = 10.82APGRR158 pKa = 11.84NAHH161 pKa = 6.39IAQVAATLWLTRR173 pKa = 11.84TLHH176 pKa = 6.64DD177 pKa = 3.77KK178 pKa = 10.98ALARR182 pKa = 11.84HH183 pKa = 5.38QGFRR187 pKa = 11.84DD188 pKa = 3.62LQQ190 pKa = 3.74

Molecular weight: 21.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

907

190

717

453.5

51.48

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.497 ± 1.509

2.095 ± 0.257

4.851 ± 0.467

5.954 ± 0.868

3.638 ± 0.502

6.395 ± 0.564

2.867 ± 0.669

4.079 ± 0.459

4.19 ± 0.776

10.254 ± 0.389

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.764 ± 0.354

2.867 ± 0.379

5.402 ± 0.455

2.867 ± 0.407

9.592 ± 1.252

7.828 ± 0.229

5.072 ± 0.167

7.387 ± 0.515

2.756 ± 0.462

2.646 ± 0.794
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski