CRESS virus sp. ct0Vt4

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; unclassified Cressdnaviricota; CRESS viruses

Average proteome isoelectric point is 7.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5Q2WC63|A0A5Q2WC63_9VIRU Uncharacterized protein OS=CRESS virus sp. ct0Vt4 OX=2656673 PE=4 SV=1
MM1 pKa = 7.84PCHH4 pKa = 6.52PLLSRR9 pKa = 11.84EE10 pKa = 4.19DD11 pKa = 3.67TGFSPYY17 pKa = 10.41HH18 pKa = 5.32NTSIHH23 pKa = 5.5HH24 pKa = 6.43TSPATAYY31 pKa = 10.28GFEE34 pKa = 4.54ANWNEE39 pKa = 4.04EE40 pKa = 3.58NRR42 pKa = 11.84QNMSIGNWSSASSLRR57 pKa = 11.84LDD59 pKa = 4.61SEE61 pKa = 4.2EE62 pKa = 5.05LDD64 pKa = 4.21PFSAMYY70 pKa = 9.28TPNSVDD76 pKa = 3.25QQLPTTTSGNRR87 pKa = 11.84TLMLTEE93 pKa = 5.74HH94 pKa = 7.17DD95 pKa = 5.08LNWDD99 pKa = 3.44NDD101 pKa = 3.87QLPEE105 pKa = 3.94IQRR108 pKa = 11.84LTGTLYY114 pKa = 11.08GNQPSPEE121 pKa = 4.08TLRR124 pKa = 11.84PFPALYY130 pKa = 9.98EE131 pKa = 4.12YY132 pKa = 11.19LHH134 pKa = 6.38TPQSVVSRR142 pKa = 11.84RR143 pKa = 11.84TTLSPSPWNDD153 pKa = 2.84TFQSMWDD160 pKa = 3.71LLALASHH167 pKa = 6.62EE168 pKa = 4.25EE169 pKa = 3.86HH170 pKa = 6.76GQRR173 pKa = 11.84QDD175 pKa = 3.23LMPIPRR181 pKa = 11.84TQIPSSGMGIRR192 pKa = 11.84ARR194 pKa = 11.84RR195 pKa = 11.84TSSWTNSEE203 pKa = 3.92ARR205 pKa = 11.84STFPTYY211 pKa = 10.96SDD213 pKa = 3.72GQIDD217 pKa = 4.32TPCPLRR223 pKa = 11.84QRR225 pKa = 11.84EE226 pKa = 3.73VDD228 pKa = 3.75AFSALQSFGSPAICTQCHH246 pKa = 7.19GIPISTPKK254 pKa = 10.46RR255 pKa = 11.84KK256 pKa = 7.33THH258 pKa = 5.78

Molecular weight: 29.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5Q2WB21|A0A5Q2WB21_9VIRU Putative capsid protein OS=CRESS virus sp. ct0Vt4 OX=2656673 PE=4 SV=1
MM1 pKa = 7.16TVNLSLLLRR10 pKa = 11.84CISCKK15 pKa = 10.11INLLRR20 pKa = 11.84VLGQRR25 pKa = 11.84LVLPTSSWKK34 pKa = 10.52RR35 pKa = 11.84LTCLGRR41 pKa = 11.84RR42 pKa = 11.84AEE44 pKa = 3.99RR45 pKa = 11.84LARR48 pKa = 11.84KK49 pKa = 9.97DD50 pKa = 3.16IVLGLSTNKK59 pKa = 8.67TRR61 pKa = 11.84TTGLVFIFNFIYY73 pKa = 10.6

Molecular weight: 8.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1076

73

471

269.0

30.48

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.134 ± 0.593

1.115 ± 0.401

4.461 ± 0.647

4.647 ± 0.375

3.81 ± 0.443

6.506 ± 0.603

2.323 ± 0.494

4.647 ± 0.293

6.041 ± 1.816

7.807 ± 1.38

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.509 ± 0.177

5.019 ± 0.724

5.576 ± 1.077

3.81 ± 0.623

6.784 ± 0.609

8.178 ± 1.223

8.086 ± 0.813

6.227 ± 1.419

2.509 ± 0.485

3.81 ± 0.582
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski