Corynebacterium resistens (strain DSM 45100 / JCM 12819 / GTC 2026 / SICGH 158)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium resistens

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2160 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F8DY62|F8DY62_CORRG Putative membrane protein OS=Corynebacterium resistens (strain DSM 45100 / JCM 12819 / GTC 2026 / SICGH 158) OX=662755 GN=CRES_0441 PE=4 SV=1
MM1 pKa = 7.42NPTRR5 pKa = 11.84GEE7 pKa = 4.08TDD9 pKa = 3.36PSRR12 pKa = 11.84NPVPSEE18 pKa = 3.53HH19 pKa = 6.87HH20 pKa = 6.61GGDD23 pKa = 3.44GAATGGHH30 pKa = 7.22DD31 pKa = 4.32SPVLTPVEE39 pKa = 3.96ALVEE43 pKa = 4.26QFGPPSVSLEE53 pKa = 4.14DD54 pKa = 3.72MLQVALDD61 pKa = 4.25PSTPDD66 pKa = 3.97PGDD69 pKa = 3.39EE70 pKa = 5.31LIPDD74 pKa = 3.99NDD76 pKa = 4.14SVHH79 pKa = 7.38DD80 pKa = 4.08SASDD84 pKa = 3.23AGADD88 pKa = 3.23AGGASGEE95 pKa = 4.42PDD97 pKa = 4.25LSDD100 pKa = 5.11LGDD103 pKa = 3.63GSYY106 pKa = 11.24PDD108 pKa = 4.22ATPGAADD115 pKa = 5.05DD116 pKa = 4.75LPSPTGEE123 pKa = 4.04SEE125 pKa = 4.43AVGGEE130 pKa = 3.95HH131 pKa = 7.66WDD133 pKa = 3.77TNQPNPQGHH142 pKa = 7.49DD143 pKa = 3.52DD144 pKa = 3.89YY145 pKa = 11.71GVPGEE150 pKa = 3.88DD151 pKa = 3.64HH152 pKa = 7.22GYY154 pKa = 9.7GGYY157 pKa = 10.69DD158 pKa = 3.3GVHH161 pKa = 7.03DD162 pKa = 5.03PNHH165 pKa = 5.83GTGGHH170 pKa = 4.86NTHH173 pKa = 7.19PNAHH177 pKa = 6.01EE178 pKa = 3.9TDD180 pKa = 3.49PFNDD184 pKa = 3.36EE185 pKa = 4.18GGIGG189 pKa = 3.32

Molecular weight: 19.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F8DXH4|F8DXH4_CORRG Putative oxidoreductase OS=Corynebacterium resistens (strain DSM 45100 / JCM 12819 / GTC 2026 / SICGH 158) OX=662755 GN=CRES_0356 PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84VHH19 pKa = 5.99GFRR22 pKa = 11.84TRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AIVSARR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 9.22GRR42 pKa = 11.84KK43 pKa = 9.07SLTAA47 pKa = 4.07

Molecular weight: 5.52 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2160

0

2160

755222

14

2667

349.6

37.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.308 ± 0.058

0.732 ± 0.014

5.816 ± 0.043

6.361 ± 0.064

3.215 ± 0.034

8.451 ± 0.043

2.186 ± 0.024

4.867 ± 0.038

3.869 ± 0.043

9.163 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.275 ± 0.023

3.186 ± 0.031

5.099 ± 0.045

3.542 ± 0.03

6.331 ± 0.053

6.069 ± 0.041

6.031 ± 0.047

7.989 ± 0.048

1.372 ± 0.021

2.14 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski