Capybara microvirus Cap3_SP_363

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V1FVS5|A0A4V1FVS5_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_363 OX=2585435 PE=4 SV=1
MM1 pKa = 7.07IRR3 pKa = 11.84KK4 pKa = 9.49LIGEE8 pKa = 4.41HH9 pKa = 5.87VPSVVQDD16 pKa = 4.52DD17 pKa = 3.47IRR19 pKa = 11.84LITVVDD25 pKa = 3.58EE26 pKa = 4.52EE27 pKa = 5.48GNVSSTFSKK36 pKa = 10.77YY37 pKa = 10.45DD38 pKa = 3.57PSSVSYY44 pKa = 10.87GCVGDD49 pKa = 3.57WSLNSLISAGINPSTLNLSTNNRR72 pKa = 11.84LNKK75 pKa = 9.71FDD77 pKa = 4.06EE78 pKa = 4.91FSDD81 pKa = 4.13FEE83 pKa = 5.15AYY85 pKa = 10.21ADD87 pKa = 3.73SIMRR91 pKa = 11.84DD92 pKa = 3.73VIIEE96 pKa = 4.19TPQVDD101 pKa = 3.98SNEE104 pKa = 4.16NNNN107 pKa = 3.37

Molecular weight: 11.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W5Q0|A0A4P8W5Q0_9VIRU Minor capsid protein OS=Capybara microvirus Cap3_SP_363 OX=2585435 PE=4 SV=1
MM1 pKa = 7.42LTQTLNIRR9 pKa = 11.84NNTHH13 pKa = 5.59YY14 pKa = 10.1FCPSGSRR21 pKa = 11.84LINSVINPSTEE32 pKa = 3.83RR33 pKa = 11.84YY34 pKa = 9.34KK35 pKa = 10.69SLRR38 pKa = 11.84VQGYY42 pKa = 6.98NQRR45 pKa = 11.84LYY47 pKa = 11.38YY48 pKa = 10.29EE49 pKa = 3.92YY50 pKa = 10.05TYY52 pKa = 10.59CKK54 pKa = 9.95SKK56 pKa = 10.67NYY58 pKa = 9.93PVFSYY63 pKa = 10.49TLTYY67 pKa = 10.59NNKK70 pKa = 9.25SLPMFYY76 pKa = 11.08GNAVHH81 pKa = 7.67DD82 pKa = 4.59YY83 pKa = 10.84NDD85 pKa = 2.45IRR87 pKa = 11.84YY88 pKa = 8.08FFRR91 pKa = 11.84EE92 pKa = 4.01SGFDD96 pKa = 3.23KK97 pKa = 10.87HH98 pKa = 6.69LLRR101 pKa = 11.84HH102 pKa = 5.64YY103 pKa = 10.69GSVVKK108 pKa = 9.98YY109 pKa = 8.81FVASEE114 pKa = 4.09LGEE117 pKa = 4.34GGISHH122 pKa = 6.8QDD124 pKa = 3.29SLSHH128 pKa = 5.82NNKK131 pKa = 9.16RR132 pKa = 11.84AQRR135 pKa = 11.84GKK137 pKa = 10.59DD138 pKa = 3.51NNPHH142 pKa = 4.87YY143 pKa = 10.7HH144 pKa = 6.35VIFFVYY150 pKa = 9.94NANDD154 pKa = 2.99TRR156 pKa = 11.84YY157 pKa = 9.71PYY159 pKa = 10.49IRR161 pKa = 11.84INGKK165 pKa = 6.96QFKK168 pKa = 9.89TIVQRR173 pKa = 11.84YY174 pKa = 4.38WQGDD178 pKa = 2.72AWRR181 pKa = 11.84TKK183 pKa = 10.33KK184 pKa = 9.52PQEE187 pKa = 4.04YY188 pKa = 10.19KK189 pKa = 10.84FGIAMNAKK197 pKa = 9.12YY198 pKa = 10.65NLGEE202 pKa = 4.1ITNGSAIRR210 pKa = 11.84YY211 pKa = 6.18NSKK214 pKa = 10.86YY215 pKa = 9.39VVKK218 pKa = 10.65DD219 pKa = 3.16VLQSRR224 pKa = 11.84KK225 pKa = 9.88DD226 pKa = 3.7DD227 pKa = 3.57SCLRR231 pKa = 11.84SCEE234 pKa = 4.36EE235 pKa = 3.8YY236 pKa = 9.75WNSVDD241 pKa = 3.45GEE243 pKa = 4.46YY244 pKa = 10.51FITHH248 pKa = 6.72HH249 pKa = 6.65KK250 pKa = 10.4LFWDD254 pKa = 4.44DD255 pKa = 3.57YY256 pKa = 10.06FDD258 pKa = 5.62RR259 pKa = 11.84YY260 pKa = 11.27VNDD263 pKa = 3.63FASDD267 pKa = 3.42VEE269 pKa = 4.6YY270 pKa = 10.74INGISDD276 pKa = 3.59VFGGFHH282 pKa = 6.62YY283 pKa = 10.5EE284 pKa = 3.94VADD287 pKa = 4.13FSGMSEE293 pKa = 4.02NEE295 pKa = 3.91LYY297 pKa = 10.61DD298 pKa = 3.9AYY300 pKa = 11.42VYY302 pKa = 10.32IYY304 pKa = 10.29GDD306 pKa = 3.17RR307 pKa = 11.84VNFDD311 pKa = 3.45NLLTEE316 pKa = 4.15HH317 pKa = 7.4RR318 pKa = 11.84DD319 pKa = 3.65YY320 pKa = 11.14IIDD323 pKa = 4.37LEE325 pKa = 4.16INRR328 pKa = 11.84YY329 pKa = 8.49KK330 pKa = 10.57NRR332 pKa = 11.84HH333 pKa = 4.14RR334 pKa = 11.84TKK336 pKa = 10.52VKK338 pKa = 9.07ISNGIGLSALDD349 pKa = 3.87KK350 pKa = 10.68MVDD353 pKa = 3.59GKK355 pKa = 10.95IPMPVDD361 pKa = 3.34SKK363 pKa = 10.75KK364 pKa = 10.91IKK366 pKa = 8.76MQYY369 pKa = 10.41ADD371 pKa = 2.65IYY373 pKa = 9.29YY374 pKa = 8.5YY375 pKa = 10.89RR376 pKa = 11.84KK377 pKa = 9.28MYY379 pKa = 10.8YY380 pKa = 10.06DD381 pKa = 3.48VEE383 pKa = 4.43KK384 pKa = 10.72DD385 pKa = 2.99INGNSRR391 pKa = 11.84YY392 pKa = 9.71VINYY396 pKa = 9.17KK397 pKa = 10.63GIEE400 pKa = 3.97FRR402 pKa = 11.84KK403 pKa = 10.3KK404 pKa = 10.37NLLNEE409 pKa = 4.09LDD411 pKa = 3.68KK412 pKa = 11.6LQLKK416 pKa = 9.21VRR418 pKa = 11.84NCISLVSNSLEE429 pKa = 3.79LQDD432 pKa = 4.61RR433 pKa = 11.84FKK435 pKa = 11.25EE436 pKa = 4.23HH437 pKa = 6.16YY438 pKa = 9.22LKK440 pKa = 10.77CSRR443 pKa = 11.84DD444 pKa = 3.76FYY446 pKa = 11.54FEE448 pKa = 4.94NFDD451 pKa = 4.13KK452 pKa = 11.33NVVLLNFSDD461 pKa = 3.9YY462 pKa = 11.31LYY464 pKa = 10.69INNIDD469 pKa = 3.86NFIEE473 pKa = 4.4KK474 pKa = 9.44YY475 pKa = 10.34AYY477 pKa = 9.63YY478 pKa = 10.77SKK480 pKa = 10.48IYY482 pKa = 10.05RR483 pKa = 11.84NRR485 pKa = 11.84LFRR488 pKa = 11.84QFDD491 pKa = 4.21DD492 pKa = 3.64NFVPLSSYY500 pKa = 10.59VAIDD504 pKa = 4.52PISDD508 pKa = 3.25YY509 pKa = 11.48GRR511 pKa = 11.84FIEE514 pKa = 4.85CRR516 pKa = 11.84VYY518 pKa = 11.14DD519 pKa = 4.7EE520 pKa = 6.31DD521 pKa = 4.34YY522 pKa = 10.99TDD524 pKa = 4.19CFYY527 pKa = 11.38DD528 pKa = 3.48RR529 pKa = 11.84QRR531 pKa = 11.84HH532 pKa = 5.08HH533 pKa = 7.22RR534 pKa = 11.84LHH536 pKa = 7.06LYY538 pKa = 10.5AEE540 pKa = 4.78YY541 pKa = 10.15IKK543 pKa = 10.65HH544 pKa = 6.8PYY546 pKa = 8.26FQEE549 pKa = 4.04IACLCGFFDD558 pKa = 6.09CIQDD562 pKa = 3.97FVDD565 pKa = 3.39KK566 pKa = 11.28LKK568 pKa = 10.97DD569 pKa = 3.27EE570 pKa = 4.45KK571 pKa = 10.66QRR573 pKa = 11.84KK574 pKa = 8.59DD575 pKa = 3.13RR576 pKa = 11.84EE577 pKa = 3.65EE578 pKa = 4.32RR579 pKa = 11.84EE580 pKa = 4.0RR581 pKa = 11.84VKK583 pKa = 11.23ANAYY587 pKa = 10.31SCGLLL592 pKa = 3.59

Molecular weight: 71.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1671

107

592

417.8

47.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.925 ± 1.683

0.898 ± 0.495

7.54 ± 0.332

4.608 ± 0.388

4.967 ± 0.419

6.344 ± 0.783

1.855 ± 0.568

5.745 ± 0.425

6.523 ± 0.544

7.241 ± 0.171

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.334 ± 0.465

7.959 ± 0.614

2.454 ± 0.317

4.189 ± 0.788

4.668 ± 1.039

7.899 ± 0.724

4.907 ± 1.12

6.104 ± 0.473

0.958 ± 0.151

6.882 ± 1.5
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski