Torque teno mini virus 18

Taxonomy: Viruses; Anelloviridae; Betatorquevirus

Average proteome isoelectric point is 7.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A173GQ21|A0A173GQ21_9VIRU ORF3 OS=Torque teno mini virus 18 OX=1859149 PE=4 SV=1
MM1 pKa = 7.49SLTPVIYY8 pKa = 10.31GPQALEE14 pKa = 4.09LQWVNSIIHH23 pKa = 5.4NHH25 pKa = 5.71GLFCGCDD32 pKa = 3.27TPIKK36 pKa = 10.13HH37 pKa = 7.0LEE39 pKa = 4.27RR40 pKa = 11.84ILNKK44 pKa = 10.3RR45 pKa = 11.84GTQLCLTRR53 pKa = 11.84GDD55 pKa = 3.93GEE57 pKa = 4.26EE58 pKa = 5.36DD59 pKa = 3.25GKK61 pKa = 10.9QDD63 pKa = 3.51QEE65 pKa = 4.11EE66 pKa = 4.63DD67 pKa = 3.64GGISPGDD74 pKa = 3.69LEE76 pKa = 5.23RR77 pKa = 11.84LFAEE81 pKa = 5.34DD82 pKa = 3.52GDD84 pKa = 4.21EE85 pKa = 4.23EE86 pKa = 4.82RR87 pKa = 11.84GG88 pKa = 3.52

Molecular weight: 9.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A173GQ22|A0A173GQ22_9VIRU Capsid protein OS=Torque teno mini virus 18 OX=1859149 PE=3 SV=1
MM1 pKa = 7.82RR2 pKa = 11.84SRR4 pKa = 11.84VRR6 pKa = 11.84QHH8 pKa = 5.92QKK10 pKa = 7.94NTSYY14 pKa = 8.98THH16 pKa = 4.98GTKK19 pKa = 10.45NEE21 pKa = 4.07DD22 pKa = 3.26ALQNLQLKK30 pKa = 9.13DD31 pKa = 4.13LKK33 pKa = 10.55PKK35 pKa = 10.1YY36 pKa = 9.41VQHH39 pKa = 7.22LLQTLDD45 pKa = 2.92TSTRR49 pKa = 11.84GTKK52 pKa = 9.5HH53 pKa = 5.9KK54 pKa = 10.34KK55 pKa = 4.85QTRR58 pKa = 11.84RR59 pKa = 11.84HH60 pKa = 4.89PRR62 pKa = 11.84KK63 pKa = 9.16KK64 pKa = 9.44RR65 pKa = 11.84KK66 pKa = 9.01HH67 pKa = 5.13RR68 pKa = 11.84RR69 pKa = 11.84SRR71 pKa = 11.84TSSSSSSHH79 pKa = 6.14SSNSSSSDD87 pKa = 3.2SSDD90 pKa = 2.8

Molecular weight: 10.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

824

88

646

274.7

32.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.034 ± 0.703

1.699 ± 0.485

4.733 ± 1.277

5.218 ± 1.459

3.398 ± 1.203

4.733 ± 2.049

2.791 ± 1.597

5.947 ± 1.701

8.131 ± 1.238

8.859 ± 0.566

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.335 ± 0.104

5.097 ± 0.565

6.675 ± 1.695

6.189 ± 0.431

7.767 ± 1.178

6.796 ± 3.644

8.859 ± 0.997

1.82 ± 0.207

2.791 ± 1.124

4.126 ± 1.178
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski