Fusobacterium varium ATCC 27725

Taxonomy: cellular organisms; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium varium

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3007 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C6JMC7|C6JMC7_FUSVA 1 3-propanediol dehydrogenase OS=Fusobacterium varium ATCC 27725 OX=469618 GN=dhaT PE=4 SV=1
MM1 pKa = 7.57KK2 pKa = 10.17KK3 pKa = 10.21YY4 pKa = 8.9EE5 pKa = 4.54CKK7 pKa = 9.7VCGYY11 pKa = 10.05IYY13 pKa = 10.52DD14 pKa = 4.17PVEE17 pKa = 4.35GDD19 pKa = 3.85PDD21 pKa = 3.87SGIAPGTAFEE31 pKa = 5.97DD32 pKa = 4.28IPDD35 pKa = 3.74DD36 pKa = 4.06WVCPLCGVGKK46 pKa = 10.32DD47 pKa = 3.59DD48 pKa = 5.59FEE50 pKa = 6.9AII52 pKa = 3.94

Molecular weight: 5.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C6JLE6|C6JLE6_FUSVA S4 domain protein YaaA OS=Fusobacterium varium ATCC 27725 OX=469618 GN=yaaA PE=4 SV=1
MM1 pKa = 7.44KK2 pKa = 9.59RR3 pKa = 11.84TFQPNKK9 pKa = 9.63AKK11 pKa = 10.38RR12 pKa = 11.84KK13 pKa = 8.12KK14 pKa = 10.21DD15 pKa = 3.02HH16 pKa = 6.3GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.42NGRR28 pKa = 11.84KK29 pKa = 7.92VLKK32 pKa = 9.96RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84QVLSAA44 pKa = 4.26

Molecular weight: 5.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3007

0

3007

949191

25

3391

315.7

35.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.796 ± 0.052

0.908 ± 0.017

5.054 ± 0.038

7.941 ± 0.071

4.709 ± 0.054

7.234 ± 0.091

1.232 ± 0.019

9.919 ± 0.059

9.487 ± 0.058

8.921 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.72 ± 0.026

5.932 ± 0.067

2.723 ± 0.03

2.046 ± 0.02

3.292 ± 0.035

5.873 ± 0.041

5.12 ± 0.067

6.256 ± 0.043

0.663 ± 0.012

4.173 ± 0.035
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski