Salmonella phage SE16

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Lederbergvirus; unclassified Lederbergvirus

Average proteome isoelectric point is 6.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 70 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A513ZX01|A0A513ZX01_9CAUD Uncharacterized protein OS=Salmonella phage SE16 OX=2575326 PE=4 SV=1
MM1 pKa = 7.52IAMLSPTQIMQYY13 pKa = 9.75QKK15 pKa = 10.94EE16 pKa = 4.53SVDD19 pKa = 4.19RR20 pKa = 11.84ALTCANCGQKK30 pKa = 10.32LHH32 pKa = 5.86VLEE35 pKa = 4.29VHH37 pKa = 5.94VCEE40 pKa = 4.68ACCSEE45 pKa = 5.43LMSDD49 pKa = 4.48PNSAMYY55 pKa = 10.4EE56 pKa = 4.1EE57 pKa = 5.48EE58 pKa = 5.11DD59 pKa = 5.44DD60 pKa = 4.54EE61 pKa = 7.52DD62 pKa = 5.12DD63 pKa = 3.93FAPGKK68 pKa = 10.34EE69 pKa = 4.16DD70 pKa = 3.16

Molecular weight: 7.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A513ZX13|A0A513ZX13_9CAUD Repressor OS=Salmonella phage SE16 OX=2575326 PE=4 SV=1
MM1 pKa = 7.54RR2 pKa = 11.84RR3 pKa = 11.84QRR5 pKa = 11.84RR6 pKa = 11.84SFTDD10 pKa = 4.5IICEE14 pKa = 3.91NCKK17 pKa = 10.21YY18 pKa = 10.77LPTKK22 pKa = 10.48RR23 pKa = 11.84SRR25 pKa = 11.84NKK27 pKa = 9.55PKK29 pKa = 10.29PIPKK33 pKa = 9.96EE34 pKa = 3.93SDD36 pKa = 3.19VKK38 pKa = 9.6TFNYY42 pKa = 7.51TAHH45 pKa = 6.73LWDD48 pKa = 3.94IRR50 pKa = 11.84WLRR53 pKa = 11.84HH54 pKa = 5.19RR55 pKa = 11.84ARR57 pKa = 11.84KK58 pKa = 8.96

Molecular weight: 7.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

70

0

70

12639

38

725

180.6

20.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.043 ± 0.491

1.131 ± 0.155

5.95 ± 0.253

6.686 ± 0.384

3.394 ± 0.228

6.955 ± 0.421

1.685 ± 0.175

6.243 ± 0.348

6.67 ± 0.301

8.007 ± 0.252

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.062 ± 0.175

4.85 ± 0.28

3.909 ± 0.204

4.344 ± 0.327

5.974 ± 0.301

6.266 ± 0.266

4.961 ± 0.262

5.815 ± 0.303

1.677 ± 0.18

3.378 ± 0.183
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski