Linnemannia elongata AG-77

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; Mucoromycota; Mortierellomycotina; Mortierellomycetes; Mortierellales; Mortierellaceae; Linnemannia; Linnemannia elongata

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 14849 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A197JCW0|A0A197JCW0_9FUNG Uncharacterized protein OS=Linnemannia elongata AG-77 OX=1314771 GN=K457DRAFT_25561 PE=4 SV=1
MM1 pKa = 7.94PKK3 pKa = 9.05TPKK6 pKa = 10.0RR7 pKa = 11.84VLTATSDD14 pKa = 3.5NADD17 pKa = 2.84ADD19 pKa = 3.94MQEE22 pKa = 4.32EE23 pKa = 4.37EE24 pKa = 4.66VEE26 pKa = 4.36GGEE29 pKa = 4.05PLCEE33 pKa = 3.78IEE35 pKa = 5.98KK36 pKa = 10.73NVLNNVCKK44 pKa = 10.51AWTAYY49 pKa = 10.53FGDD52 pKa = 4.22LAIAPEE58 pKa = 4.28DD59 pKa = 3.56EE60 pKa = 4.81GEE62 pKa = 4.28DD63 pKa = 3.78MEE65 pKa = 7.05GDD67 pKa = 3.54DD68 pKa = 4.86YY69 pKa = 11.67YY70 pKa = 11.83AEE72 pKa = 4.49GGYY75 pKa = 10.97GEE77 pKa = 5.09DD78 pKa = 3.31VDD80 pKa = 4.87MSLSTKK86 pKa = 10.21GNSGRR91 pKa = 11.84LDD93 pKa = 4.61DD94 pKa = 4.1IDD96 pKa = 4.61YY97 pKa = 10.83YY98 pKa = 11.51CEE100 pKa = 3.72

Molecular weight: 11.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A197JLX1|A0A197JLX1_9FUNG Uncharacterized protein OS=Linnemannia elongata AG-77 OX=1314771 GN=K457DRAFT_157705 PE=4 SV=1
MM1 pKa = 7.4SLFHH5 pKa = 6.06STPVTVQRR13 pKa = 11.84TYY15 pKa = 10.83YY16 pKa = 10.03KK17 pKa = 9.52PSAMSRR23 pKa = 11.84LRR25 pKa = 11.84ALFSSRR31 pKa = 11.84RR32 pKa = 11.84RR33 pKa = 11.84TAVPVATRR41 pKa = 11.84TTHH44 pKa = 3.84QRR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84RR49 pKa = 11.84PVRR52 pKa = 11.84QPVRR56 pKa = 11.84KK57 pKa = 7.89TGGFGLFRR65 pKa = 11.84RR66 pKa = 11.84TPRR69 pKa = 11.84ARR71 pKa = 11.84RR72 pKa = 11.84TVVTPQRR79 pKa = 11.84RR80 pKa = 11.84RR81 pKa = 11.84GGLFASLRR89 pKa = 11.84PRR91 pKa = 11.84RR92 pKa = 11.84HH93 pKa = 5.45YY94 pKa = 10.98GRR96 pKa = 11.84TRR98 pKa = 11.84VAPAPRR104 pKa = 11.84QHH106 pKa = 6.05HH107 pKa = 5.66HH108 pKa = 6.44HH109 pKa = 6.26GKK111 pKa = 9.93GRR113 pKa = 11.84TFATVLAALSLRR125 pKa = 11.84KK126 pKa = 9.33HH127 pKa = 5.22RR128 pKa = 11.84HH129 pKa = 3.36RR130 pKa = 11.84HH131 pKa = 4.11GAYY134 pKa = 9.23GGAPMRR140 pKa = 11.84PRR142 pKa = 11.84YY143 pKa = 9.55

Molecular weight: 16.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

14847

2

14849

6795375

49

4727

457.6

50.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.93 ± 0.02

1.252 ± 0.012

5.519 ± 0.016

5.814 ± 0.022

3.658 ± 0.013

6.457 ± 0.021

2.703 ± 0.013

4.886 ± 0.015

4.982 ± 0.02

8.926 ± 0.02

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.353 ± 0.009

3.997 ± 0.013

5.759 ± 0.023

4.738 ± 0.027

5.51 ± 0.015

9.02 ± 0.034

6.5 ± 0.018

6.043 ± 0.018

1.196 ± 0.007

2.757 ± 0.01
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski