Gluconacetobacter sp. SXCC-1

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter; unclassified Gluconacetobacter

Average proteome isoelectric point is 7.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4747 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F3S3N1|F3S3N1_9PROT Uncharacterized protein OS=Gluconacetobacter sp. SXCC-1 OX=1004836 GN=SXCC_00652 PE=4 SV=1
MM1 pKa = 7.58ANSLYY6 pKa = 10.93SVFLQQALTKK16 pKa = 10.71NIDD19 pKa = 3.45VTDD22 pKa = 4.23GSIRR26 pKa = 11.84LALLDD31 pKa = 3.51NSYY34 pKa = 11.45SFNAGDD40 pKa = 4.77ADD42 pKa = 3.91TTSALKK48 pKa = 10.69ALVGAAVAPSAAVTVAGGSVTIPAATFAAIASGTTVQAVLVYY90 pKa = 10.88SGTTPIAYY98 pKa = 8.96IDD100 pKa = 3.8TATGIPASTDD110 pKa = 2.61GSTITVSWTAAAITLGLTASS130 pKa = 3.68

Molecular weight: 12.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F3S211|F3S211_9PROT Uncharacterized protein OS=Gluconacetobacter sp. SXCC-1 OX=1004836 GN=SXCC_00078 PE=4 SV=1
MM1 pKa = 7.68GKK3 pKa = 9.65RR4 pKa = 11.84AGRR7 pKa = 11.84RR8 pKa = 11.84TMSPTRR14 pKa = 11.84TILPNPKK21 pKa = 8.12NTKK24 pKa = 9.01RR25 pKa = 11.84KK26 pKa = 9.46KK27 pKa = 10.57GKK29 pKa = 9.74ALPWRR34 pKa = 11.84AGRR37 pKa = 11.84GQRR40 pKa = 11.84WRR42 pKa = 11.84FPMLTMLRR50 pKa = 11.84VGPVPAQGAALAPTGTPWPRR70 pKa = 11.84AKK72 pKa = 10.4HH73 pKa = 5.56PKK75 pKa = 9.28QKK77 pKa = 10.93

Molecular weight: 8.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4747

0

4747

1206339

37

3750

254.1

27.63

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.123 ± 0.054

1.173 ± 0.016

5.53 ± 0.029

4.65 ± 0.039

3.445 ± 0.027

8.687 ± 0.038

2.704 ± 0.02

4.872 ± 0.031

2.334 ± 0.029

9.951 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.978 ± 0.021

2.585 ± 0.031

5.875 ± 0.033

3.405 ± 0.025

7.783 ± 0.052

5.284 ± 0.04

5.732 ± 0.047

7.193 ± 0.032

1.451 ± 0.016

2.247 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski