Amino acid dipepetide frequency for Turkey adenovirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
12.162AlaAla: 12.162 ± 1.886
1.377AlaCys: 1.377 ± 0.344
5.584AlaAsp: 5.584 ± 0.929
7.343AlaGlu: 7.343 ± 0.967
3.289AlaPhe: 3.289 ± 0.502
8.337AlaGly: 8.337 ± 1.793
1.836AlaHis: 1.836 ± 0.443
2.065AlaIle: 2.065 ± 0.43
2.065AlaLys: 2.065 ± 0.43
9.026AlaLeu: 9.026 ± 0.857
1.606AlaMet: 1.606 ± 0.416
2.754AlaAsn: 2.754 ± 0.514
7.343AlaPro: 7.343 ± 0.957
2.83AlaGln: 2.83 ± 0.677
7.802AlaArg: 7.802 ± 0.744
6.196AlaSer: 6.196 ± 0.892
4.054AlaThr: 4.054 ± 0.656
7.802AlaVal: 7.802 ± 1.218
0.688AlaTrp: 0.688 ± 0.27
2.754AlaTyr: 2.754 ± 0.49
0.0AlaXaa: 0.0 ± 0.0
Cys
1.606CysAla: 1.606 ± 0.437
0.382CysCys: 0.382 ± 0.199
0.841CysAsp: 0.841 ± 0.279
1.147CysGlu: 1.147 ± 0.32
0.688CysPhe: 0.688 ± 0.219
1.3CysGly: 1.3 ± 0.334
0.841CysHis: 0.841 ± 0.359
0.306CysIle: 0.306 ± 0.152
0.535CysLys: 0.535 ± 0.203
1.683CysLeu: 1.683 ± 0.413
0.459CysMet: 0.459 ± 0.244
0.765CysAsn: 0.765 ± 0.309
1.3CysPro: 1.3 ± 0.372
0.306CysGln: 0.306 ± 0.144
1.224CysArg: 1.224 ± 0.521
0.918CysSer: 0.918 ± 0.281
0.994CysThr: 0.994 ± 0.289
0.994CysVal: 0.994 ± 0.295
0.459CysTrp: 0.459 ± 0.17
0.612CysTyr: 0.612 ± 0.198
0.0CysXaa: 0.0 ± 0.0
Asp
5.278AspAla: 5.278 ± 0.843
1.071AspCys: 1.071 ± 0.333
3.901AspAsp: 3.901 ± 0.645
3.748AspGlu: 3.748 ± 0.695
1.836AspPhe: 1.836 ± 0.355
5.966AspGly: 5.966 ± 1.138
0.918AspHis: 0.918 ± 0.203
1.683AspIle: 1.683 ± 0.464
0.688AspLys: 0.688 ± 0.242
5.354AspLeu: 5.354 ± 0.777
0.765AspMet: 0.765 ± 0.298
1.147AspAsn: 1.147 ± 0.39
6.043AspPro: 6.043 ± 0.745
1.759AspGln: 1.759 ± 0.356
5.048AspArg: 5.048 ± 0.576
2.677AspSer: 2.677 ± 0.522
3.06AspThr: 3.06 ± 0.57
3.671AspVal: 3.671 ± 0.585
0.612AspTrp: 0.612 ± 0.248
1.606AspTyr: 1.606 ± 0.369
0.0AspXaa: 0.0 ± 0.0
Glu
4.513GluAla: 4.513 ± 0.585
0.918GluCys: 0.918 ± 0.313
4.742GluAsp: 4.742 ± 0.608
7.649GluGlu: 7.649 ± 1.741
1.071GluPhe: 1.071 ± 0.258
4.513GluGly: 4.513 ± 0.605
1.071GluHis: 1.071 ± 0.245
1.453GluIle: 1.453 ± 0.364
1.759GluLys: 1.759 ± 0.331
5.507GluLeu: 5.507 ± 0.663
1.224GluMet: 1.224 ± 0.389
1.3GluAsn: 1.3 ± 0.241
3.977GluPro: 3.977 ± 0.777
2.601GluGln: 2.601 ± 0.381
5.125GluArg: 5.125 ± 0.759
2.83GluSer: 2.83 ± 0.511
3.901GluThr: 3.901 ± 0.72
3.365GluVal: 3.365 ± 0.427
0.612GluTrp: 0.612 ± 0.226
1.836GluTyr: 1.836 ± 0.386
0.0GluXaa: 0.0 ± 0.0
Phe
3.289PheAla: 3.289 ± 0.531
0.841PheCys: 0.841 ± 0.26
2.371PheAsp: 2.371 ± 0.528
2.065PheGlu: 2.065 ± 0.39
1.759PhePhe: 1.759 ± 0.306
1.989PheGly: 1.989 ± 0.544
1.3PheHis: 1.3 ± 0.292
0.612PheIle: 0.612 ± 0.222
0.918PheLys: 0.918 ± 0.207
3.901PheLeu: 3.901 ± 0.62
1.071PheMet: 1.071 ± 0.3
1.912PheAsn: 1.912 ± 0.415
2.142PhePro: 2.142 ± 0.431
1.147PheGln: 1.147 ± 0.291
2.983PheArg: 2.983 ± 0.617
2.065PheSer: 2.065 ± 0.324
1.989PheThr: 1.989 ± 0.334
3.595PheVal: 3.595 ± 0.551
0.459PheTrp: 0.459 ± 0.169
1.759PheTyr: 1.759 ± 0.347
0.0PheXaa: 0.0 ± 0.0
Gly
10.173GlyAla: 10.173 ± 2.075
0.765GlyCys: 0.765 ± 0.311
4.207GlyAsp: 4.207 ± 0.642
4.589GlyGlu: 4.589 ± 0.737
2.295GlyPhe: 2.295 ± 0.37
11.244GlyGly: 11.244 ± 2.298
0.918GlyHis: 0.918 ± 0.336
1.3GlyIle: 1.3 ± 0.37
1.53GlyLys: 1.53 ± 0.419
6.272GlyLeu: 6.272 ± 0.72
1.3GlyMet: 1.3 ± 0.322
2.142GlyAsn: 2.142 ± 0.431
4.742GlyPro: 4.742 ± 0.719
2.065GlyGln: 2.065 ± 0.435
8.031GlyArg: 8.031 ± 1.776
4.819GlySer: 4.819 ± 0.824
3.518GlyThr: 3.518 ± 0.777
5.66GlyVal: 5.66 ± 0.786
1.071GlyTrp: 1.071 ± 0.302
2.065GlyTyr: 2.065 ± 0.476
0.0GlyXaa: 0.0 ± 0.0
His
1.683HisAla: 1.683 ± 0.383
0.688HisCys: 0.688 ± 0.302
0.612HisAsp: 0.612 ± 0.203
0.994HisGlu: 0.994 ± 0.281
0.918HisPhe: 0.918 ± 0.283
2.142HisGly: 2.142 ± 0.395
0.994HisHis: 0.994 ± 0.331
0.459HisIle: 0.459 ± 0.206
0.535HisLys: 0.535 ± 0.236
2.065HisLeu: 2.065 ± 0.571
0.229HisMet: 0.229 ± 0.115
1.224HisAsn: 1.224 ± 0.288
1.989HisPro: 1.989 ± 0.408
0.382HisGln: 0.382 ± 0.184
2.677HisArg: 2.677 ± 0.524
1.147HisSer: 1.147 ± 0.317
0.612HisThr: 0.612 ± 0.165
1.836HisVal: 1.836 ± 0.434
0.382HisTrp: 0.382 ± 0.17
0.841HisTyr: 0.841 ± 0.28
0.0HisXaa: 0.0 ± 0.0
Ile
2.295IleAla: 2.295 ± 0.398
0.306IleCys: 0.306 ± 0.174
1.53IleAsp: 1.53 ± 0.319
0.765IleGlu: 0.765 ± 0.237
0.994IlePhe: 0.994 ± 0.289
1.377IleGly: 1.377 ± 0.323
0.612IleHis: 0.612 ± 0.202
0.229IleIle: 0.229 ± 0.141
0.688IleLys: 0.688 ± 0.26
2.295IleLeu: 2.295 ± 0.554
0.229IleMet: 0.229 ± 0.127
0.994IleAsn: 0.994 ± 0.295
1.53IlePro: 1.53 ± 0.374
0.918IleGln: 0.918 ± 0.294
2.065IleArg: 2.065 ± 0.339
1.3IleSer: 1.3 ± 0.329
1.3IleThr: 1.3 ± 0.344
1.989IleVal: 1.989 ± 0.424
0.459IleTrp: 0.459 ± 0.186
0.765IleTyr: 0.765 ± 0.209
0.0IleXaa: 0.0 ± 0.0
Lys
2.83LysAla: 2.83 ± 0.459
0.459LysCys: 0.459 ± 0.194
1.836LysAsp: 1.836 ± 0.378
1.224LysGlu: 1.224 ± 0.4
0.841LysPhe: 0.841 ± 0.322
2.142LysGly: 2.142 ± 0.417
0.688LysHis: 0.688 ± 0.262
0.459LysIle: 0.459 ± 0.203
1.147LysLys: 1.147 ± 0.285
1.759LysLeu: 1.759 ± 0.331
0.765LysMet: 0.765 ± 0.268
1.071LysAsn: 1.071 ± 0.267
1.3LysPro: 1.3 ± 0.313
0.535LysGln: 0.535 ± 0.181
2.524LysArg: 2.524 ± 0.576
1.53LysSer: 1.53 ± 0.35
1.759LysThr: 1.759 ± 0.396
1.759LysVal: 1.759 ± 0.33
0.382LysTrp: 0.382 ± 0.168
0.994LysTyr: 0.994 ± 0.315
0.0LysXaa: 0.0 ± 0.0
Leu
8.108LeuAla: 8.108 ± 0.751
1.606LeuCys: 1.606 ± 0.386
4.666LeuAsp: 4.666 ± 0.68
3.671LeuGlu: 3.671 ± 0.479
4.207LeuPhe: 4.207 ± 0.661
5.737LeuGly: 5.737 ± 0.628
2.448LeuHis: 2.448 ± 0.561
2.754LeuIle: 2.754 ± 0.507
3.518LeuLys: 3.518 ± 0.477
8.414LeuLeu: 8.414 ± 1.203
2.142LeuMet: 2.142 ± 0.513
2.754LeuAsn: 2.754 ± 0.385
6.196LeuPro: 6.196 ± 0.661
4.819LeuGln: 4.819 ± 0.641
9.484LeuArg: 9.484 ± 1.163
6.119LeuSer: 6.119 ± 0.517
5.89LeuThr: 5.89 ± 0.573
5.278LeuVal: 5.278 ± 0.635
1.453LeuTrp: 1.453 ± 0.347
3.671LeuTyr: 3.671 ± 0.579
0.0LeuXaa: 0.0 ± 0.0
Met
2.218MetAla: 2.218 ± 0.573
0.459MetCys: 0.459 ± 0.208
1.071MetAsp: 1.071 ± 0.3
0.918MetGlu: 0.918 ± 0.341
0.688MetPhe: 0.688 ± 0.202
1.147MetGly: 1.147 ± 0.316
0.535MetHis: 0.535 ± 0.226
0.535MetIle: 0.535 ± 0.163
0.612MetLys: 0.612 ± 0.199
1.836MetLeu: 1.836 ± 0.335
0.382MetMet: 0.382 ± 0.233
0.918MetAsn: 0.918 ± 0.222
1.3MetPro: 1.3 ± 0.308
0.765MetGln: 0.765 ± 0.205
1.759MetArg: 1.759 ± 0.411
1.3MetSer: 1.3 ± 0.405
1.071MetThr: 1.071 ± 0.296
1.453MetVal: 1.453 ± 0.395
0.153MetTrp: 0.153 ± 0.102
0.841MetTyr: 0.841 ± 0.235
0.0MetXaa: 0.0 ± 0.0
Asn
2.907AsnAla: 2.907 ± 0.514
0.612AsnCys: 0.612 ± 0.25
1.912AsnAsp: 1.912 ± 0.44
1.3AsnGlu: 1.3 ± 0.41
1.147AsnPhe: 1.147 ± 0.416
1.3AsnGly: 1.3 ± 0.315
0.688AsnHis: 0.688 ± 0.262
0.918AsnIle: 0.918 ± 0.349
0.765AsnLys: 0.765 ± 0.239
3.289AsnLeu: 3.289 ± 0.702
0.688AsnMet: 0.688 ± 0.368
1.071AsnAsn: 1.071 ± 0.354
2.677AsnPro: 2.677 ± 0.399
1.071AsnGln: 1.071 ± 0.395
2.83AsnArg: 2.83 ± 0.397
1.759AsnSer: 1.759 ± 0.47
1.912AsnThr: 1.912 ± 0.506
2.907AsnVal: 2.907 ± 0.611
0.535AsnTrp: 0.535 ± 0.246
1.606AsnTyr: 1.606 ± 0.476
0.0AsnXaa: 0.0 ± 0.0
Pro
8.337ProAla: 8.337 ± 1.044
1.3ProCys: 1.3 ± 0.371
4.513ProAsp: 4.513 ± 0.717
5.201ProGlu: 5.201 ± 0.79
2.907ProPhe: 2.907 ± 0.476
4.283ProGly: 4.283 ± 1.002
1.3ProHis: 1.3 ± 0.361
1.683ProIle: 1.683 ± 0.326
1.683ProLys: 1.683 ± 0.401
6.501ProLeu: 6.501 ± 0.845
1.453ProMet: 1.453 ± 0.428
1.683ProAsn: 1.683 ± 0.434
8.796ProPro: 8.796 ± 1.361
1.912ProGln: 1.912 ± 0.511
5.89ProArg: 5.89 ± 0.638
5.354ProSer: 5.354 ± 0.722
4.36ProThr: 4.36 ± 0.603
4.895ProVal: 4.895 ± 0.816
0.612ProTrp: 0.612 ± 0.182
2.601ProTyr: 2.601 ± 0.48
0.0ProXaa: 0.0 ± 0.0
Gln
2.83GlnAla: 2.83 ± 0.627
0.535GlnCys: 0.535 ± 0.229
1.606GlnAsp: 1.606 ± 0.305
1.912GlnGlu: 1.912 ± 0.367
1.453GlnPhe: 1.453 ± 0.398
1.759GlnGly: 1.759 ± 0.405
1.147GlnHis: 1.147 ± 0.309
0.841GlnIle: 0.841 ± 0.218
1.224GlnLys: 1.224 ± 0.277
4.13GlnLeu: 4.13 ± 0.453
1.147GlnMet: 1.147 ± 0.301
1.453GlnAsn: 1.453 ± 0.427
2.907GlnPro: 2.907 ± 0.494
2.524GlnGln: 2.524 ± 1.25
2.983GlnArg: 2.983 ± 0.65
1.989GlnSer: 1.989 ± 0.377
1.912GlnThr: 1.912 ± 0.513
1.3GlnVal: 1.3 ± 0.306
0.306GlnTrp: 0.306 ± 0.161
1.3GlnTyr: 1.3 ± 0.379
0.0GlnXaa: 0.0 ± 0.0
Arg
8.72ArgAla: 8.72 ± 1.136
1.53ArgCys: 1.53 ± 0.622
4.819ArgAsp: 4.819 ± 0.657
5.354ArgGlu: 5.354 ± 0.664
3.365ArgPhe: 3.365 ± 0.388
6.96ArgGly: 6.96 ± 1.268
2.83ArgHis: 2.83 ± 0.423
1.759ArgIle: 1.759 ± 0.268
2.065ArgLys: 2.065 ± 0.364
8.49ArgLeu: 8.49 ± 0.652
1.836ArgMet: 1.836 ± 0.353
2.524ArgAsn: 2.524 ± 0.598
6.272ArgPro: 6.272 ± 0.947
3.212ArgGln: 3.212 ± 0.474
12.85ArgArg: 12.85 ± 2.033
5.354ArgSer: 5.354 ± 0.539
4.283ArgThr: 4.283 ± 0.495
6.425ArgVal: 6.425 ± 0.887
1.606ArgTrp: 1.606 ± 0.375
2.065ArgTyr: 2.065 ± 0.341
0.0ArgXaa: 0.0 ± 0.0
Ser
5.89SerAla: 5.89 ± 0.705
1.53SerCys: 1.53 ± 0.457
3.595SerAsp: 3.595 ± 0.455
2.907SerGlu: 2.907 ± 0.4
2.754SerPhe: 2.754 ± 0.514
5.737SerGly: 5.737 ± 0.67
0.535SerHis: 0.535 ± 0.177
1.989SerIle: 1.989 ± 0.392
1.3SerLys: 1.3 ± 0.371
4.589SerLeu: 4.589 ± 0.701
1.147SerMet: 1.147 ± 0.344
1.759SerAsn: 1.759 ± 0.412
3.977SerPro: 3.977 ± 0.616
2.448SerGln: 2.448 ± 0.618
4.972SerArg: 4.972 ± 0.742
4.666SerSer: 4.666 ± 0.841
3.136SerThr: 3.136 ± 0.625
4.972SerVal: 4.972 ± 0.684
0.918SerTrp: 0.918 ± 0.257
1.683SerTyr: 1.683 ± 0.344
0.0SerXaa: 0.0 ± 0.0
Thr
4.895ThrAla: 4.895 ± 0.945
0.535ThrCys: 0.535 ± 0.209
2.065ThrAsp: 2.065 ± 0.398
3.06ThrGlu: 3.06 ± 0.384
2.065ThrPhe: 2.065 ± 0.367
4.36ThrGly: 4.36 ± 0.796
0.765ThrHis: 0.765 ± 0.302
0.994ThrIle: 0.994 ± 0.292
0.994ThrLys: 0.994 ± 0.288
6.119ThrLeu: 6.119 ± 0.846
0.841ThrMet: 0.841 ± 0.221
1.989ThrAsn: 1.989 ± 0.627
4.589ThrPro: 4.589 ± 0.913
1.836ThrGln: 1.836 ± 0.313
3.365ThrArg: 3.365 ± 0.453
3.442ThrSer: 3.442 ± 0.615
4.207ThrThr: 4.207 ± 0.706
5.201ThrVal: 5.201 ± 0.694
0.612ThrTrp: 0.612 ± 0.223
2.295ThrTyr: 2.295 ± 0.468
0.0ThrXaa: 0.0 ± 0.0
Val
5.813ValAla: 5.813 ± 0.796
1.377ValCys: 1.377 ± 0.462
4.436ValAsp: 4.436 ± 0.446
3.748ValGlu: 3.748 ± 0.558
3.595ValPhe: 3.595 ± 0.456
5.66ValGly: 5.66 ± 1.026
1.836ValHis: 1.836 ± 0.503
1.989ValIle: 1.989 ± 0.435
1.912ValLys: 1.912 ± 0.404
7.572ValLeu: 7.572 ± 0.866
0.994ValMet: 0.994 ± 0.327
2.983ValAsn: 2.983 ± 0.624
5.354ValPro: 5.354 ± 0.824
2.601ValGln: 2.601 ± 0.476
6.119ValArg: 6.119 ± 0.982
3.977ValSer: 3.977 ± 0.628
3.901ValThr: 3.901 ± 0.552
4.819ValVal: 4.819 ± 0.636
0.535ValTrp: 0.535 ± 0.168
2.754ValTyr: 2.754 ± 0.495
0.0ValXaa: 0.0 ± 0.0
Trp
0.994TrpAla: 0.994 ± 0.308
0.382TrpCys: 0.382 ± 0.192
0.459TrpAsp: 0.459 ± 0.182
0.841TrpGlu: 0.841 ± 0.247
0.765TrpPhe: 0.765 ± 0.267
0.688TrpGly: 0.688 ± 0.198
0.229TrpHis: 0.229 ± 0.134
0.306TrpIle: 0.306 ± 0.148
0.688TrpLys: 0.688 ± 0.223
1.147TrpLeu: 1.147 ± 0.278
0.153TrpMet: 0.153 ± 0.116
0.459TrpAsn: 0.459 ± 0.151
0.612TrpPro: 0.612 ± 0.303
0.535TrpGln: 0.535 ± 0.202
0.918TrpArg: 0.918 ± 0.294
1.071TrpSer: 1.071 ± 0.4
0.918TrpThr: 0.918 ± 0.264
0.994TrpVal: 0.994 ± 0.356
0.306TrpTrp: 0.306 ± 0.201
0.382TrpTyr: 0.382 ± 0.145
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.371TyrAla: 2.371 ± 0.523
0.688TyrCys: 0.688 ± 0.245
2.065TyrAsp: 2.065 ± 0.444
1.53TyrGlu: 1.53 ± 0.422
1.53TyrPhe: 1.53 ± 0.417
2.065TyrGly: 2.065 ± 0.327
0.918TyrHis: 0.918 ± 0.252
0.306TyrIle: 0.306 ± 0.159
1.377TyrLys: 1.377 ± 0.44
2.983TyrLeu: 2.983 ± 0.434
1.453TyrMet: 1.453 ± 0.441
0.994TyrAsn: 0.994 ± 0.321
2.218TyrPro: 2.218 ± 0.452
0.994TyrGln: 0.994 ± 0.242
3.671TyrArg: 3.671 ± 0.576
1.989TyrSer: 1.989 ± 0.453
1.453TyrThr: 1.453 ± 0.311
3.06TyrVal: 3.06 ± 0.471
0.765TyrTrp: 0.765 ± 0.262
1.377TyrTyr: 1.377 ± 0.252
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 37 proteins (13075 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski