Penicillium decumbens

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7144 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1V6PIW9|A0A1V6PIW9_PENDC MRP-L46 domain-containing protein OS=Penicillium decumbens OX=69771 GN=PENDEC_c004G04933 PE=3 SV=1
MM1 pKa = 7.63SSTSPAGSNPSFSYY15 pKa = 10.31SSYY18 pKa = 8.19MTSSTQNAYY27 pKa = 10.49GSGSDD32 pKa = 5.2DD33 pKa = 4.61EE34 pKa = 4.83IASLPSVSTTDD45 pKa = 3.14SDD47 pKa = 4.42IDD49 pKa = 3.81TLSDD53 pKa = 3.64DD54 pKa = 4.25FSDD57 pKa = 5.98AEE59 pKa = 4.28AEE61 pKa = 3.89WRR63 pKa = 11.84EE64 pKa = 4.21SIEE67 pKa = 3.96QLEE70 pKa = 4.64LLLSMVLVPFIGKK83 pKa = 9.34YY84 pKa = 9.64LGRR87 pKa = 11.84RR88 pKa = 11.84CAYY91 pKa = 9.02WGWTSFMQWKK101 pKa = 9.88YY102 pKa = 9.0PVEE105 pKa = 4.18VVMTSPAAFKK115 pKa = 10.85GAGLIEE121 pKa = 4.36AAATLL126 pKa = 3.8

Molecular weight: 13.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1V6PBN4|A0A1V6PBN4_PENDC Uncharacterized protein OS=Penicillium decumbens OX=69771 GN=PENDEC_c011G06140 PE=3 SV=1
MM1 pKa = 7.55PRR3 pKa = 11.84LRR5 pKa = 11.84CRR7 pKa = 11.84ALPTIRR13 pKa = 11.84APVSSTTPMTRR24 pKa = 11.84ILQFTPRR31 pKa = 11.84TTSTPSILSSRR42 pKa = 11.84PFSSLLSTPTRR53 pKa = 11.84SQPSQSLSRR62 pKa = 11.84LPFTSSPITSSVSSLLTQKK81 pKa = 10.41PFQTRR86 pKa = 11.84SFSATASLGVRR97 pKa = 11.84RR98 pKa = 11.84STYY101 pKa = 9.47RR102 pKa = 11.84PSRR105 pKa = 11.84RR106 pKa = 11.84IQKK109 pKa = 9.34RR110 pKa = 11.84RR111 pKa = 11.84HH112 pKa = 5.33GFLSRR117 pKa = 11.84NKK119 pKa = 9.19DD120 pKa = 3.12HH121 pKa = 7.47KK122 pKa = 10.92GRR124 pKa = 11.84KK125 pKa = 6.0TLTRR129 pKa = 11.84RR130 pKa = 11.84RR131 pKa = 11.84MKK133 pKa = 10.37GRR135 pKa = 11.84KK136 pKa = 8.84AMSWW140 pKa = 3.05

Molecular weight: 15.9 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7144

0

7144

3565102

8

6054

499.0

55.25

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.515 ± 0.024

1.124 ± 0.01

5.773 ± 0.021

6.289 ± 0.036

3.72 ± 0.019

6.759 ± 0.025

2.389 ± 0.012

4.883 ± 0.021

4.769 ± 0.027

8.841 ± 0.032

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.264 ± 0.01

3.662 ± 0.016

6.223 ± 0.034

4.085 ± 0.02

6.195 ± 0.024

8.484 ± 0.036

5.824 ± 0.018

6.066 ± 0.022

1.4 ± 0.011

2.734 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski