Yoonia sediminilitoris

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Yoonia

Average proteome isoelectric point is 6.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4606 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T6K8K1|A0A2T6K8K1_9RHOB Amino acid/amide ABC transporter substrate-binding protein (HAAT family) OS=Yoonia sediminilitoris OX=1286148 GN=C8N45_11527 PE=4 SV=1
MM1 pKa = 7.58NYY3 pKa = 10.2AISRR7 pKa = 11.84IAAFAALLMIAAPASAATYY26 pKa = 10.14SYY28 pKa = 11.68DD29 pKa = 3.25FTTLNSGQTTYY40 pKa = 11.41SSGLAVEE47 pKa = 4.64SDD49 pKa = 3.45GLTVEE54 pKa = 4.59VTAGRR59 pKa = 11.84YY60 pKa = 8.86DD61 pKa = 3.45SYY63 pKa = 11.28MGLDD67 pKa = 3.52NDD69 pKa = 4.72QIADD73 pKa = 3.8TDD75 pKa = 4.26CADD78 pKa = 5.66GGCQWYY84 pKa = 9.95DD85 pKa = 3.27NSVGEE90 pKa = 4.17LLGYY94 pKa = 9.81RR95 pKa = 11.84AVAITSDD102 pKa = 3.39GLGIAGFFDD111 pKa = 4.55GSDD114 pKa = 3.11IDD116 pKa = 4.9GDD118 pKa = 4.01FGNDD122 pKa = 3.64LITFTFDD129 pKa = 2.51RR130 pKa = 11.84VVDD133 pKa = 4.48FTRR136 pKa = 11.84VFFTGVEE143 pKa = 4.26SFGYY147 pKa = 10.51AQDD150 pKa = 3.59QFDD153 pKa = 3.94VFVDD157 pKa = 4.64GVLLRR162 pKa = 11.84EE163 pKa = 3.99EE164 pKa = 4.26VLIGEE169 pKa = 4.34NNPYY173 pKa = 10.99DD174 pKa = 3.72LTGFSAIGRR183 pKa = 11.84SISFGADD190 pKa = 2.4SGYY193 pKa = 11.03DD194 pKa = 3.22NFRR197 pKa = 11.84IGGLEE202 pKa = 3.93VEE204 pKa = 4.92LAAVPLPAGGLLLLSGLFGLALARR228 pKa = 11.84RR229 pKa = 11.84RR230 pKa = 11.84GTAAA234 pKa = 3.56

Molecular weight: 24.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T6KG93|A0A2T6KG93_9RHOB Uncharacterized protein OS=Yoonia sediminilitoris OX=1286148 GN=C8N45_106206 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNRR10 pKa = 11.84VRR12 pKa = 11.84KK13 pKa = 8.99NRR15 pKa = 11.84HH16 pKa = 3.77GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.35GRR39 pKa = 11.84AKK41 pKa = 10.69LSAA44 pKa = 3.92

Molecular weight: 5.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4606

0

4606

1395618

25

10445

303.0

32.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.864 ± 0.047

0.949 ± 0.013

6.382 ± 0.039

5.368 ± 0.035

3.841 ± 0.029

8.47 ± 0.044

2.062 ± 0.02

5.587 ± 0.028

3.362 ± 0.032

9.745 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.847 ± 0.026

2.931 ± 0.029

4.944 ± 0.032

3.511 ± 0.022

6.161 ± 0.037

5.316 ± 0.032

5.759 ± 0.037

7.238 ± 0.031

1.389 ± 0.019

2.274 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski