Capybara microvirus Cap1_SP_109

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.24

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W453|A0A4P8W453_9VIRU Replication initiator protein OS=Capybara microvirus Cap1_SP_109 OX=2584807 PE=4 SV=1
MM1 pKa = 7.68RR2 pKa = 11.84FYY4 pKa = 11.54VEE6 pKa = 4.44GSRR9 pKa = 11.84LFNRR13 pKa = 11.84STNEE17 pKa = 3.4DD18 pKa = 3.71SIKK21 pKa = 10.31VKK23 pKa = 10.67SYY25 pKa = 10.35VDD27 pKa = 3.74VIEE30 pKa = 4.31KK31 pKa = 10.09VVNEE35 pKa = 3.87KK36 pKa = 10.08TGLIEE41 pKa = 4.01EE42 pKa = 4.38KK43 pKa = 10.51VVCKK47 pKa = 10.37EE48 pKa = 4.07LTDD51 pKa = 3.71DD52 pKa = 4.05RR53 pKa = 11.84YY54 pKa = 10.95EE55 pKa = 4.34GLSSYY60 pKa = 11.35DD61 pKa = 3.14FDD63 pKa = 5.93LDD65 pKa = 4.27HH66 pKa = 7.07IVLAGATSLLQPCPKK81 pKa = 10.22VSGNVFDD88 pKa = 5.39ISDD91 pKa = 3.88SLASNVDD98 pKa = 3.42YY99 pKa = 11.4LGDD102 pKa = 3.61YY103 pKa = 11.35YY104 pKa = 10.58EE105 pKa = 4.23TNKK108 pKa = 10.47NIKK111 pKa = 9.6EE112 pKa = 4.1DD113 pKa = 3.63EE114 pKa = 4.13

Molecular weight: 12.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W4Y4|A0A4P8W4Y4_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_109 OX=2584807 PE=4 SV=1
MM1 pKa = 7.57CLSPIKK7 pKa = 10.15IYY9 pKa = 10.65NRR11 pKa = 11.84SEE13 pKa = 4.1SLVTNGPLYY22 pKa = 10.59IEE24 pKa = 4.63VPCGKK29 pKa = 10.13CSEE32 pKa = 4.31CQKK35 pKa = 10.71QKK37 pKa = 9.31HH38 pKa = 4.92TDD40 pKa = 3.18YY41 pKa = 10.83CIRR44 pKa = 11.84AFWQYY49 pKa = 11.33QEE51 pKa = 4.13TLIKK55 pKa = 10.55GGYY58 pKa = 9.69CYY60 pKa = 10.59FDD62 pKa = 3.35TLTYY66 pKa = 10.71DD67 pKa = 3.45SSHH70 pKa = 6.4LPKK73 pKa = 10.19FDD75 pKa = 5.58GISCFDD81 pKa = 3.19KK82 pKa = 10.56THH84 pKa = 5.38IQKK87 pKa = 10.74FIRR90 pKa = 11.84DD91 pKa = 3.64LRR93 pKa = 11.84RR94 pKa = 11.84QLDD97 pKa = 3.45YY98 pKa = 11.29HH99 pKa = 6.7FYY101 pKa = 9.51EE102 pKa = 4.36SKK104 pKa = 10.76GRR106 pKa = 11.84SGSIKK111 pKa = 10.57EE112 pKa = 3.85NFKK115 pKa = 11.19YY116 pKa = 10.51FLTSEE121 pKa = 4.44YY122 pKa = 10.15GGKK125 pKa = 8.68RR126 pKa = 11.84HH127 pKa = 6.13RR128 pKa = 11.84PHH130 pKa = 6.21YY131 pKa = 10.12HH132 pKa = 4.96VLFFVTDD139 pKa = 3.75PSISVSQLKK148 pKa = 10.53YY149 pKa = 10.75YY150 pKa = 10.19INKK153 pKa = 8.55CWIYY157 pKa = 10.56GITDD161 pKa = 3.68SVSTTNDD168 pKa = 2.61RR169 pKa = 11.84VVRR172 pKa = 11.84GISAISYY179 pKa = 5.31VTKK182 pKa = 10.82YY183 pKa = 7.22VTKK186 pKa = 10.33DD187 pKa = 3.09QEE189 pKa = 4.05FSLLIEE195 pKa = 4.58KK196 pKa = 10.12RR197 pKa = 11.84LKK199 pKa = 10.66YY200 pKa = 10.79YY201 pKa = 10.71SILYY205 pKa = 10.43GSDD208 pKa = 2.77SLEE211 pKa = 3.88YY212 pKa = 10.56LEE214 pKa = 5.54KK215 pKa = 11.03VKK217 pKa = 10.44DD218 pKa = 3.81YY219 pKa = 11.4KK220 pKa = 10.63RR221 pKa = 11.84FRR223 pKa = 11.84PFFNSSTNFGSSALKK238 pKa = 10.13MVDD241 pKa = 3.65QDD243 pKa = 4.16LLLDD247 pKa = 3.65GRR249 pKa = 11.84IWISDD254 pKa = 3.36SKK256 pKa = 9.52TSKK259 pKa = 10.69KK260 pKa = 10.13FVSLPLYY267 pKa = 9.7YY268 pKa = 9.77RR269 pKa = 11.84RR270 pKa = 11.84KK271 pKa = 10.25LFYY274 pKa = 10.74DD275 pKa = 3.93VIKK278 pKa = 10.3TEE280 pKa = 4.34DD281 pKa = 3.65GRR283 pKa = 11.84IKK285 pKa = 10.27WVMNDD290 pKa = 2.75RR291 pKa = 11.84GFDD294 pKa = 3.68YY295 pKa = 10.68KK296 pKa = 10.92LKK298 pKa = 10.81RR299 pKa = 11.84LDD301 pKa = 3.66TNISLLEE308 pKa = 4.08DD309 pKa = 4.28RR310 pKa = 11.84YY311 pKa = 9.49NTYY314 pKa = 11.01YY315 pKa = 11.33LNLDD319 pKa = 3.76NYY321 pKa = 10.44CSEE324 pKa = 5.03DD325 pKa = 4.25YY326 pKa = 10.74FPKK329 pKa = 10.42DD330 pKa = 3.3YY331 pKa = 10.92VSRR334 pKa = 11.84LILSYY339 pKa = 11.34LDD341 pKa = 3.16GRR343 pKa = 11.84TFKK346 pKa = 11.09DD347 pKa = 3.4FATYY351 pKa = 10.25LYY353 pKa = 10.3VYY355 pKa = 8.95RR356 pKa = 11.84GKK358 pKa = 9.53MFSGGVLPDD367 pKa = 3.06FHH369 pKa = 8.48KK370 pKa = 10.57FYY372 pKa = 11.39SMSLRR377 pKa = 11.84GSTIFSKK384 pKa = 10.68LYY386 pKa = 10.43SSNLSIRR393 pKa = 11.84SRR395 pKa = 11.84MRR397 pKa = 11.84SRR399 pKa = 11.84LDD401 pKa = 3.4KK402 pKa = 10.79ISIRR406 pKa = 11.84EE407 pKa = 3.83TSFSSFRR414 pKa = 11.84NFDD417 pKa = 3.12KK418 pKa = 10.91LYY420 pKa = 10.84NLFNVLLRR428 pKa = 11.84EE429 pKa = 4.29SHH431 pKa = 6.69TSNQYY436 pKa = 8.9TFDD439 pKa = 3.85YY440 pKa = 11.05KK441 pKa = 11.02EE442 pKa = 4.17DD443 pKa = 4.52LIGKK447 pKa = 9.14YY448 pKa = 10.35KK449 pKa = 10.97LILL452 pKa = 3.89

Molecular weight: 53.83 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1743

114

570

348.6

39.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.475 ± 1.436

0.975 ± 0.361

6.942 ± 0.562

5.049 ± 0.717

4.877 ± 0.625

6.368 ± 0.855

1.205 ± 0.237

5.393 ± 0.389

6.942 ± 0.914

9.122 ± 1.145

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.721 ± 0.335

5.967 ± 1.06

2.582 ± 0.614

3.442 ± 0.954

5.278 ± 0.531

9.237 ± 0.588

6.311 ± 0.435

6.713 ± 0.916

0.688 ± 0.128

6.713 ± 1.048
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski