Vibrio hepatarius

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio oreintalis group

Average proteome isoelectric point is 5.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4313 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0M0HZ37|A0A0M0HZ37_9VIBR 2-octaprenyl-3-methyl-6-methoxy-1 4-benzoquinol hydroxylase OS=Vibrio hepatarius OX=171383 GN=ubiF PE=3 SV=1
MM1 pKa = 7.04TVQRR5 pKa = 11.84APIEE9 pKa = 4.08MTFEE13 pKa = 3.44EE14 pKa = 4.93WFEE17 pKa = 4.07KK18 pKa = 10.18FKK20 pKa = 10.99PVANPTGDD28 pKa = 3.35GFVQVDD34 pKa = 3.72DD35 pKa = 3.72VCYY38 pKa = 10.89VFGLHH43 pKa = 6.71GADD46 pKa = 3.45LSKK49 pKa = 11.24VQAADD54 pKa = 4.01PNCVWTLIEE63 pKa = 5.42SDD65 pKa = 5.79DD66 pKa = 3.98VDD68 pKa = 4.78CDD70 pKa = 4.34EE71 pKa = 6.51DD72 pKa = 5.86DD73 pKa = 3.81EE74 pKa = 7.27DD75 pKa = 5.63YY76 pKa = 10.37DD77 pKa = 4.27TVLLISDD84 pKa = 4.54GYY86 pKa = 11.0HH87 pKa = 5.23RR88 pKa = 11.84VNRR91 pKa = 11.84MGHH94 pKa = 6.89FITEE98 pKa = 4.14VPADD102 pKa = 3.63PEE104 pKa = 4.17SFYY107 pKa = 10.92EE108 pKa = 3.92ISYY111 pKa = 10.56DD112 pKa = 3.36

Molecular weight: 12.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0M0I384|A0A0M0I384_9VIBR ABC transporter permease OS=Vibrio hepatarius OX=171383 GN=AKJ31_05990 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.5RR3 pKa = 11.84TFQPTVLKK11 pKa = 10.46RR12 pKa = 11.84KK13 pKa = 7.65RR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.44NGRR28 pKa = 11.84KK29 pKa = 9.39VINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.22GRR39 pKa = 11.84ARR41 pKa = 11.84LSKK44 pKa = 10.83

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4313

0

4313

1386379

37

3656

321.4

35.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.68 ± 0.042

1.028 ± 0.013

5.529 ± 0.032

6.573 ± 0.036

4.108 ± 0.024

6.81 ± 0.034

2.179 ± 0.019

6.184 ± 0.026

5.33 ± 0.033

10.32 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.668 ± 0.022

4.114 ± 0.024

3.893 ± 0.025

4.578 ± 0.029

4.508 ± 0.03

6.66 ± 0.032

5.278 ± 0.029

7.253 ± 0.034

1.248 ± 0.012

3.061 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski