Capybara microvirus Cap1_SP_131

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 4.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W7U5|A0A4P8W7U5_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_131 OX=2585382 PE=4 SV=1
MM1 pKa = 7.76FDD3 pKa = 4.1VDD5 pKa = 4.45DD6 pKa = 5.07LNIFRR11 pKa = 11.84PFFHH15 pKa = 7.56DD16 pKa = 5.89AILEE20 pKa = 4.26SSGDD24 pKa = 3.67VYY26 pKa = 11.31SWSDD30 pKa = 3.47LSLGAPLLPDD40 pKa = 4.36TILNAVCFKK49 pKa = 10.67VSEE52 pKa = 4.2RR53 pKa = 11.84LVSRR57 pKa = 11.84FLMLLRR63 pKa = 11.84SGFNCYY69 pKa = 9.88FDD71 pKa = 4.54LSYY74 pKa = 11.36DD75 pKa = 3.98FSPARR80 pKa = 11.84DD81 pKa = 3.63DD82 pKa = 4.23FDD84 pKa = 4.59FFFMVEE90 pKa = 4.17PLCADD95 pKa = 3.44DD96 pKa = 5.66CDD98 pKa = 5.24IVLSWLIKK106 pKa = 9.8YY107 pKa = 9.57CFLKK111 pKa = 10.98VKK113 pKa = 9.97EE114 pKa = 4.12

Molecular weight: 13.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W481|A0A4P8W481_9VIRU Major capsid protein OS=Capybara microvirus Cap1_SP_131 OX=2585382 PE=3 SV=1
MM1 pKa = 7.04FTTFKK6 pKa = 10.61KK7 pKa = 10.52DD8 pKa = 3.01EE9 pKa = 4.22YY10 pKa = 11.02DD11 pKa = 3.67FLVPEE16 pKa = 4.1YY17 pKa = 10.68AFNRR21 pKa = 11.84RR22 pKa = 11.84RR23 pKa = 11.84QLFPRR28 pKa = 11.84ADD30 pKa = 3.65LPGLVNPIDD39 pKa = 4.08YY40 pKa = 10.35EE41 pKa = 4.09NSQLDD46 pKa = 3.44LSIPCRR52 pKa = 11.84TCIGCRR58 pKa = 11.84LDD60 pKa = 5.38QSRR63 pKa = 11.84QWADD67 pKa = 2.63RR68 pKa = 11.84MMIEE72 pKa = 5.16LDD74 pKa = 3.3HH75 pKa = 6.63SKK77 pKa = 10.95CGIFVTLTYY86 pKa = 10.75DD87 pKa = 3.19PAFAHH92 pKa = 6.76PCSIDD97 pKa = 3.27SDD99 pKa = 3.8DD100 pKa = 3.59RR101 pKa = 11.84VYY103 pKa = 11.56YY104 pKa = 10.75SLDD107 pKa = 3.31VRR109 pKa = 11.84DD110 pKa = 3.63TQLFNKK116 pKa = 9.26SLRR119 pKa = 11.84KK120 pKa = 9.82AFPDD124 pKa = 3.07RR125 pKa = 11.84KK126 pKa = 9.97IRR128 pKa = 11.84FFLAGEE134 pKa = 4.22YY135 pKa = 10.81GPSTWRR141 pKa = 11.84PHH143 pKa = 3.84YY144 pKa = 9.6HH145 pKa = 6.07AVYY148 pKa = 10.06FGLSIDD154 pKa = 4.72DD155 pKa = 5.26FPDD158 pKa = 3.76LMPLKK163 pKa = 9.2RR164 pKa = 11.84TSAGSLIYY172 pKa = 10.23TSEE175 pKa = 4.15KK176 pKa = 10.18LQKK179 pKa = 8.78LWKK182 pKa = 9.88RR183 pKa = 11.84GFISLSPVSWQTCAYY198 pKa = 8.04VARR201 pKa = 11.84YY202 pKa = 5.27TTKK205 pKa = 10.96KK206 pKa = 10.74LIDD209 pKa = 4.27SNPLMSDD216 pKa = 3.0YY217 pKa = 11.48DD218 pKa = 4.4LFNMHH223 pKa = 7.43PEE225 pKa = 3.91FMTCSRR231 pKa = 11.84KK232 pKa = 9.69PGLSGYY238 pKa = 10.31FYY240 pKa = 10.56DD241 pKa = 4.79DD242 pKa = 4.41HH243 pKa = 7.5PDD245 pKa = 3.63LVPDD249 pKa = 4.94SIDD252 pKa = 3.3DD253 pKa = 3.7FKK255 pKa = 11.36IYY257 pKa = 10.27IRR259 pKa = 11.84DD260 pKa = 3.68PDD262 pKa = 3.56GLKK265 pKa = 10.08PVKK268 pKa = 10.09SVKK271 pKa = 8.75TPKK274 pKa = 10.5YY275 pKa = 10.33LLKK278 pKa = 10.37QLQAVNPLLYY288 pKa = 10.51NEE290 pKa = 4.3YY291 pKa = 10.63VDD293 pKa = 3.7MQRR296 pKa = 11.84VSSEE300 pKa = 3.99DD301 pKa = 3.39SLLLKK306 pKa = 10.2LQRR309 pKa = 11.84TSLPEE314 pKa = 3.59AEE316 pKa = 4.78YY317 pKa = 10.51ILSEE321 pKa = 4.33EE322 pKa = 4.17FTKK325 pKa = 10.91QNSAKK330 pKa = 10.45KK331 pKa = 10.45LIRR334 pKa = 11.84SDD336 pKa = 3.5LL337 pKa = 3.76

Molecular weight: 39.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1493

82

570

248.8

27.87

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.167 ± 1.321

1.273 ± 0.45

7.77 ± 1.217

3.885 ± 0.381

5.894 ± 0.789

5.894 ± 1.034

1.741 ± 0.428

4.287 ± 0.362

3.952 ± 0.9

9.109 ± 0.987

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.277 ± 0.626

5.023 ± 0.861

6.095 ± 0.422

3.215 ± 0.589

4.756 ± 0.627

10.181 ± 1.775

5.291 ± 0.92

5.76 ± 0.584

1.407 ± 0.395

5.023 ± 0.354
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski