Paxillus rubicundulus Ve08.2h10

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Boletales; Paxilineae; Paxillaceae; Paxillus; Paxillus rubicundulus

Average proteome isoelectric point is 6.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 21906 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D0D2A3|A0A0D0D2A3_9AGAM Unplaced genomic scaffold scaffold_2061 whole genome shotgun sequence OS=Paxillus rubicundulus Ve08.2h10 OX=930991 GN=PAXRUDRAFT_834924 PE=4 SV=1
MM1 pKa = 7.01STIINVKK8 pKa = 7.58TVNWLNGFSLKK19 pKa = 10.6PLDD22 pKa = 4.63LSIHH26 pKa = 5.75FLGHH30 pKa = 6.27VSLQDD35 pKa = 3.34IPEE38 pKa = 4.92HH39 pKa = 7.57IPIQVSICLGDD50 pKa = 3.32EE51 pKa = 4.6WIDD54 pKa = 3.35QLFPIVEE61 pKa = 4.25ALLADD66 pKa = 3.94NMSEE70 pKa = 4.24SADD73 pKa = 3.66DD74 pKa = 3.76VSPEE78 pKa = 4.13LFTFLPLPSQFDD90 pKa = 4.0PYY92 pKa = 11.39DD93 pKa = 3.73GLEE96 pKa = 4.03WQSLAKK102 pKa = 10.29EE103 pKa = 4.06IEE105 pKa = 3.98HH106 pKa = 7.02WLLQDD111 pKa = 3.37PAFNMMHH118 pKa = 6.83PGCYY122 pKa = 9.23ILMWEE127 pKa = 4.71LFWMAFVTVFPSFPYY142 pKa = 10.2GQWPDD147 pKa = 3.25WDD149 pKa = 3.27PWIPVDD155 pKa = 5.7GYY157 pKa = 11.27FILDD161 pKa = 3.75WVADD165 pKa = 4.01LDD167 pKa = 4.27EE168 pKa = 5.37PEE170 pKa = 4.73PAPVPAIVCEE180 pKa = 4.52SVWEE184 pKa = 3.99QSKK187 pKa = 10.66AAVDD191 pKa = 3.52

Molecular weight: 21.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D0DNQ2|A0A0D0DNQ2_9AGAM Unplaced genomic scaffold scaffold_1228 whole genome shotgun sequence (Fragment) OS=Paxillus rubicundulus Ve08.2h10 OX=930991 GN=PAXRUDRAFT_96613 PE=4 SV=1
MM1 pKa = 7.59GLLLHH6 pKa = 6.99LIRR9 pKa = 11.84RR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84PFPSPVRR19 pKa = 11.84ATLAFTSHH27 pKa = 7.8PIHH30 pKa = 6.88PLHH33 pKa = 6.75LPVHH37 pKa = 6.25SGIPNVSTTPPLVSPQASGFWW58 pKa = 3.32

Molecular weight: 6.41 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

21895

11

21906

5778669

49

5106

263.8

29.25

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.986 ± 0.017

1.691 ± 0.011

5.333 ± 0.014

5.706 ± 0.02

3.654 ± 0.012

6.268 ± 0.018

3.06 ± 0.012

4.918 ± 0.013

4.675 ± 0.017

9.338 ± 0.021

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.317 ± 0.008

3.5 ± 0.011

6.525 ± 0.027

4.055 ± 0.014

5.768 ± 0.019

8.708 ± 0.023

6.084 ± 0.01

6.3 ± 0.013

1.565 ± 0.008

2.55 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski