Taro vein chlorosis virus (TAVCV)

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Nucleorhabdovirus

Average proteome isoelectric point is 6.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q5GA90|NCAP_TAVCV Nucleoprotein OS=Taro vein chlorosis virus OX=303300 GN=N PE=3 SV=1
MM1 pKa = 7.64INTSRR6 pKa = 11.84RR7 pKa = 11.84SSRR10 pKa = 11.84NKK12 pKa = 9.24PATPAPEE19 pKa = 4.68LIKK22 pKa = 10.91AEE24 pKa = 4.2EE25 pKa = 4.21NPSDD29 pKa = 3.3IHH31 pKa = 7.52EE32 pKa = 5.15DD33 pKa = 3.54FADD36 pKa = 4.01LPEE39 pKa = 4.8PLLLSEE45 pKa = 4.9ARR47 pKa = 11.84AEE49 pKa = 4.0NMPAVGSAISDD60 pKa = 3.79LLKK63 pKa = 10.69VEE65 pKa = 4.62RR66 pKa = 11.84AAPLLIGNTVEE77 pKa = 4.01EE78 pKa = 4.78MVTGRR83 pKa = 11.84LADD86 pKa = 3.95RR87 pKa = 11.84GLGEE91 pKa = 3.77LTEE94 pKa = 4.11RR95 pKa = 11.84EE96 pKa = 4.31KK97 pKa = 10.76IILAIGIHH105 pKa = 6.29CGEE108 pKa = 4.46SSMEE112 pKa = 3.89HH113 pKa = 5.66MNFLVTKK120 pKa = 9.84RR121 pKa = 11.84WITEE125 pKa = 3.81EE126 pKa = 5.13LKK128 pKa = 9.25TQLTSLAATTRR139 pKa = 11.84ALTEE143 pKa = 4.23AGSLHH148 pKa = 5.82RR149 pKa = 11.84TYY151 pKa = 11.64ALLQSPDD158 pKa = 3.27QAKK161 pKa = 10.01KK162 pKa = 10.58QEE164 pKa = 4.36ALDD167 pKa = 4.02AMVTPQVGIDD177 pKa = 3.13ITTLNHH183 pKa = 6.71EE184 pKa = 4.35GLEE187 pKa = 4.93DD188 pKa = 2.9IWQSYY193 pKa = 7.61SHH195 pKa = 7.17DD196 pKa = 3.82AKK198 pKa = 11.13VDD200 pKa = 3.44AVDD203 pKa = 4.6DD204 pKa = 3.88YY205 pKa = 11.77LRR207 pKa = 11.84NILNVDD213 pKa = 3.72PTPLYY218 pKa = 11.03AEE220 pKa = 5.0DD221 pKa = 2.99EE222 pKa = 4.47WGRR225 pKa = 11.84HH226 pKa = 4.39IAFIPRR232 pKa = 11.84WQLVAYY238 pKa = 8.3GKK240 pKa = 10.39NSDD243 pKa = 3.61QFKK246 pKa = 9.56TVYY249 pKa = 10.52ADD251 pKa = 3.68EE252 pKa = 4.68INYY255 pKa = 8.96QRR257 pKa = 11.84EE258 pKa = 4.0SLEE261 pKa = 4.26RR262 pKa = 11.84ILAKK266 pKa = 10.01RR267 pKa = 11.84VKK269 pKa = 10.65LNN271 pKa = 3.24

Molecular weight: 30.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q5GA90|NCAP_TAVCV Nucleoprotein OS=Taro vein chlorosis virus OX=303300 GN=N PE=3 SV=1
MM1 pKa = 7.76SYY3 pKa = 10.99INIPDD8 pKa = 3.88DD9 pKa = 3.9VVSKK13 pKa = 11.28YY14 pKa = 11.03SDD16 pKa = 3.56DD17 pKa = 4.76LKK19 pKa = 10.48TFTQKK24 pKa = 10.81AGEE27 pKa = 4.19IPSSKK32 pKa = 10.85SLIPQTAYY40 pKa = 9.85TIAALKK46 pKa = 9.59TKK48 pKa = 10.58LKK50 pKa = 9.96FWEE53 pKa = 4.52VTAKK57 pKa = 10.45DD58 pKa = 4.23DD59 pKa = 3.84PTIASDD65 pKa = 3.21WAGVCTAITAGTFSATNLKK84 pKa = 8.11TVCEE88 pKa = 3.89LAFNLRR94 pKa = 11.84KK95 pKa = 9.12PHH97 pKa = 5.1EE98 pKa = 4.45TGNVFIHH105 pKa = 6.13TVPSDD110 pKa = 3.24WTSSISTDD118 pKa = 3.75SVDD121 pKa = 3.62TTPIPATEE129 pKa = 4.03SDD131 pKa = 3.46ATLSTVSAAVQSGAAEE147 pKa = 4.15DD148 pKa = 3.87AATKK152 pKa = 10.57AKK154 pKa = 10.4AISFLCCALIRR165 pKa = 11.84LSVKK169 pKa = 10.05EE170 pKa = 4.33PSHH173 pKa = 7.8IMTAITSIRR182 pKa = 11.84QRR184 pKa = 11.84FGSLYY189 pKa = 9.97GLASATLNAITFTRR203 pKa = 11.84QQLSRR208 pKa = 11.84IKK210 pKa = 10.53QGIEE214 pKa = 3.87TYY216 pKa = 10.58SLARR220 pKa = 11.84GTIFYY225 pKa = 9.36YY226 pKa = 10.61VRR228 pKa = 11.84YY229 pKa = 10.1ADD231 pKa = 3.66TTYY234 pKa = 11.11GSSDD238 pKa = 2.83KK239 pKa = 11.18SYY241 pKa = 10.43GVCRR245 pKa = 11.84FLLFQHH251 pKa = 6.78LEE253 pKa = 4.08LEE255 pKa = 4.52GMHH258 pKa = 6.72IYY260 pKa = 11.13KK261 pKa = 9.84MILALLTEE269 pKa = 4.88WSTVPIGLLLTWIRR283 pKa = 11.84NPKK286 pKa = 9.13SALAVVEE293 pKa = 4.21IKK295 pKa = 10.93NIITNFDD302 pKa = 3.15KK303 pKa = 11.43AGVDD307 pKa = 3.64KK308 pKa = 10.51SWKK311 pKa = 7.56YY312 pKa = 11.61SRR314 pKa = 11.84MIDD317 pKa = 3.03NTFFLNISSRR327 pKa = 11.84RR328 pKa = 11.84NVYY331 pKa = 8.77MCALLASLNKK341 pKa = 9.57RR342 pKa = 11.84HH343 pKa = 5.69VPQGVGDD350 pKa = 3.81YY351 pKa = 11.11ADD353 pKa = 3.9PRR355 pKa = 11.84NIAVIKK361 pKa = 11.03AMDD364 pKa = 4.01AAVKK368 pKa = 9.95NQVAIDD374 pKa = 3.61VTLVEE379 pKa = 5.09RR380 pKa = 11.84IYY382 pKa = 11.04EE383 pKa = 4.18KK384 pKa = 11.28YY385 pKa = 10.49LISAGSTDD393 pKa = 3.7AGTAYY398 pKa = 9.7TLSRR402 pKa = 11.84GTKK405 pKa = 8.84RR406 pKa = 11.84PNPAVFMSHH415 pKa = 5.34QQAEE419 pKa = 4.19GHH421 pKa = 5.16PTKK424 pKa = 10.69KK425 pKa = 9.45RR426 pKa = 11.84TWKK429 pKa = 10.86SMVPPPPTLQLEE441 pKa = 4.43DD442 pKa = 3.43QQQRR446 pKa = 11.84RR447 pKa = 11.84LSPEE451 pKa = 3.47LCEE454 pKa = 4.95DD455 pKa = 3.9CFSEE459 pKa = 4.43LLRR462 pKa = 11.84GKK464 pKa = 8.42HH465 pKa = 5.69HH466 pKa = 7.54RR467 pKa = 11.84ILPPPVIPSSSSEE480 pKa = 3.87VLFSKK485 pKa = 10.47SRR487 pKa = 11.84IMEE490 pKa = 3.81ISGGCSFDD498 pKa = 4.28PIGFF502 pKa = 3.93

Molecular weight: 55.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

3811

235

1928

635.2

71.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.589 ± 0.878

1.811 ± 0.183

5.668 ± 0.514

5.432 ± 0.492

2.939 ± 0.238

6.166 ± 0.452

2.86 ± 0.289

7.373 ± 0.392

5.379 ± 0.236

10.575 ± 0.788

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.545 ± 0.372

3.7 ± 0.252

4.854 ± 0.328

3.044 ± 0.079

4.933 ± 0.526

8.948 ± 0.428

6.534 ± 0.796

6.429 ± 0.309

1.863 ± 0.295

3.332 ± 0.127
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski