Veillonellaceae bacterium DNF00626

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Negativicutes; Veillonellales; Veillonellaceae; unclassified Veillonellaceae

Average proteome isoelectric point is 6.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1608 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A134CHU1|A0A134CHU1_9FIRM Uncharacterized protein OS=Veillonellaceae bacterium DNF00626 OX=1588754 GN=HMPREF3191_00914 PE=4 SV=1
MM1 pKa = 6.98QEE3 pKa = 3.68KK4 pKa = 10.63GIDD7 pKa = 3.45VSEE10 pKa = 4.3NNGVIDD16 pKa = 3.26WDD18 pKa = 4.15EE19 pKa = 4.22IKK21 pKa = 11.16NEE23 pKa = 4.17GYY25 pKa = 9.67EE26 pKa = 3.98FAIIRR31 pKa = 11.84CGYY34 pKa = 9.12GKK36 pKa = 10.55SSVDD40 pKa = 3.14SMFYY44 pKa = 11.25DD45 pKa = 3.72NVNGAQDD52 pKa = 3.66AGLKK56 pKa = 9.9IGVYY60 pKa = 9.37HH61 pKa = 6.34YY62 pKa = 11.01SYY64 pKa = 11.68ALTVEE69 pKa = 4.44DD70 pKa = 4.48AMEE73 pKa = 3.97EE74 pKa = 4.39AEE76 pKa = 5.4FVTALLEE83 pKa = 4.61DD84 pKa = 4.85CGLDD88 pKa = 3.6DD89 pKa = 4.98QSKK92 pKa = 11.35LEE94 pKa = 4.02MKK96 pKa = 9.98VWFDD100 pKa = 3.74MEE102 pKa = 5.9DD103 pKa = 3.32SDD105 pKa = 5.65GYY107 pKa = 10.01KK108 pKa = 10.14ARR110 pKa = 11.84HH111 pKa = 5.8GVTDD115 pKa = 3.66SATLTDD121 pKa = 3.3ICNVFLNTLYY131 pKa = 11.02DD132 pKa = 3.0RR133 pKa = 11.84GYY135 pKa = 11.31DD136 pKa = 3.29VGLYY140 pKa = 10.7CNLDD144 pKa = 3.41YY145 pKa = 11.6AEE147 pKa = 4.54NVLYY151 pKa = 8.04MTEE154 pKa = 4.11LKK156 pKa = 10.52EE157 pKa = 4.0FPIWIAQYY165 pKa = 11.43NSTCDD170 pKa = 3.7FPSAFMWQYY179 pKa = 10.96TDD181 pKa = 4.73SEE183 pKa = 4.98DD184 pKa = 4.39INGKK188 pKa = 9.72CFDD191 pKa = 4.7GDD193 pKa = 3.57VLMYY197 pKa = 10.94

Molecular weight: 22.48 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A134CMK9|A0A134CMK9_9FIRM Putative ferrichrome ABC transporter ATP-binding protein FhuC OS=Veillonellaceae bacterium DNF00626 OX=1588754 GN=HMPREF3191_00246 PE=4 SV=1
MM1 pKa = 7.7AKK3 pKa = 7.99MTFQPNNHH11 pKa = 5.38WRR13 pKa = 11.84KK14 pKa = 7.63KK15 pKa = 6.32THH17 pKa = 5.67GFRR20 pKa = 11.84ARR22 pKa = 11.84MKK24 pKa = 8.69TRR26 pKa = 11.84AGRR29 pKa = 11.84IVLKK33 pKa = 10.39RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.89GRR40 pKa = 11.84KK41 pKa = 8.67VLSAA45 pKa = 4.05

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1608

0

1608

480156

34

4599

298.6

33.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.64 ± 0.076

1.097 ± 0.027

5.589 ± 0.052

6.947 ± 0.07

3.966 ± 0.056

7.65 ± 0.086

2.16 ± 0.032

7.794 ± 0.064

7.551 ± 0.069

8.633 ± 0.084

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.076 ± 0.035

4.418 ± 0.072

3.368 ± 0.044

3.026 ± 0.034

4.329 ± 0.05

5.582 ± 0.043

5.594 ± 0.06

6.948 ± 0.049

0.974 ± 0.017

3.659 ± 0.045
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski