Marinomonas pollencensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Oceanospirillaceae; Marinomonas

Average proteome isoelectric point is 6.24

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3539 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3E0DH82|A0A3E0DH82_9GAMM SOS response UmuD protein OS=Marinomonas pollencensis OX=491954 GN=DFP81_11125 PE=3 SV=1
MM1 pKa = 7.47KK2 pKa = 9.6PYY4 pKa = 10.57IMNYY8 pKa = 9.9SEE10 pKa = 4.77TIEE13 pKa = 3.96ISPVCSNWRR22 pKa = 11.84KK23 pKa = 9.71IDD25 pKa = 3.58TTTKK29 pKa = 8.59TFTIEE34 pKa = 3.78SHH36 pKa = 7.24DD37 pKa = 3.88NDD39 pKa = 5.01EE40 pKa = 4.46IHH42 pKa = 7.4CDD44 pKa = 2.78WTVQTNVTEE53 pKa = 4.21PTDD56 pKa = 3.62NDD58 pKa = 4.33SILCLDD64 pKa = 3.6EE65 pKa = 3.98TAITKK70 pKa = 10.38SLEE73 pKa = 4.13PTDD76 pKa = 4.14QDD78 pKa = 5.12CMHH81 pKa = 7.32LDD83 pKa = 3.14ATYY86 pKa = 7.2EE87 pKa = 4.07TRR89 pKa = 11.84VVEE92 pKa = 4.22TSDD95 pKa = 3.34NDD97 pKa = 4.38SIYY100 pKa = 11.09LDD102 pKa = 3.62TTVMTEE108 pKa = 4.2SIEE111 pKa = 4.38GLDD114 pKa = 3.47PDD116 pKa = 4.17EE117 pKa = 4.71TVLAHH122 pKa = 7.09

Molecular weight: 13.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3E0DM61|A0A3E0DM61_9GAMM D D-heptose 1 7-bisphosphate phosphatase OS=Marinomonas pollencensis OX=491954 GN=DFP81_105217 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.46RR12 pKa = 11.84KK13 pKa = 9.37RR14 pKa = 11.84NHH16 pKa = 5.37GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.12SGRR28 pKa = 11.84QIVARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 8.91VLSAA44 pKa = 4.11

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3539

0

3539

1124909

25

1607

317.9

35.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.116 ± 0.047

1.034 ± 0.012

5.396 ± 0.03

6.062 ± 0.043

4.134 ± 0.026

6.793 ± 0.037

2.301 ± 0.019

6.264 ± 0.035

5.172 ± 0.038

10.739 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.634 ± 0.019

3.92 ± 0.028

4.027 ± 0.021

4.569 ± 0.039

4.667 ± 0.034

6.826 ± 0.036

5.197 ± 0.026

6.98 ± 0.037

1.255 ± 0.016

2.915 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski