Ornithinimicrobium pratense

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Ornithinimicrobiaceae; Ornithinimicrobium

Average proteome isoelectric point is 6.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3076 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5J6V240|A0A5J6V240_9MICO CHAT domain-containing protein OS=Ornithinimicrobium pratense OX=2593973 GN=FY030_02570 PE=4 SV=1
MM1 pKa = 7.44HH2 pKa = 7.64RR3 pKa = 11.84PFTLTALLAAAALALSACGSDD24 pKa = 3.69SAVEE28 pKa = 4.1NADD31 pKa = 3.6DD32 pKa = 5.02PGPLTVGVSPLPHH45 pKa = 7.7AEE47 pKa = 3.47ILQFVDD53 pKa = 5.14DD54 pKa = 4.78EE55 pKa = 4.43LAEE58 pKa = 4.11EE59 pKa = 4.64AGLDD63 pKa = 3.65LEE65 pKa = 5.0LVEE68 pKa = 4.69FTDD71 pKa = 4.0YY72 pKa = 11.07LQPNVALDD80 pKa = 4.62DD81 pKa = 4.5GSLDD85 pKa = 3.48ANYY88 pKa = 9.4FQHH91 pKa = 6.97APYY94 pKa = 10.26LAEE97 pKa = 3.9QEE99 pKa = 4.21AAAGYY104 pKa = 10.19DD105 pKa = 3.87FEE107 pKa = 6.28AVTPVHH113 pKa = 6.77LEE115 pKa = 3.67PLGLYY120 pKa = 10.09SATLGSVEE128 pKa = 5.02EE129 pKa = 4.69IPDD132 pKa = 3.87GAQIAIPNDD141 pKa = 3.45PTNGARR147 pKa = 11.84ALHH150 pKa = 6.44LLAEE154 pKa = 4.32QGLLTLADD162 pKa = 3.69TDD164 pKa = 4.01AASATVLDD172 pKa = 4.3IEE174 pKa = 5.38DD175 pKa = 3.81NARR178 pKa = 11.84DD179 pKa = 3.64LQFVEE184 pKa = 5.27IEE186 pKa = 4.0AAQLPRR192 pKa = 11.84SLPDD196 pKa = 2.86VDD198 pKa = 3.89AAVINGNYY206 pKa = 9.89AIQADD211 pKa = 4.86LSPATDD217 pKa = 3.46ALAAEE222 pKa = 4.6APEE225 pKa = 4.52DD226 pKa = 3.59NPYY229 pKa = 11.67ANLLVVRR236 pKa = 11.84AGDD239 pKa = 3.51EE240 pKa = 3.9SDD242 pKa = 3.38PRR244 pKa = 11.84IVQLAEE250 pKa = 3.86LLGSEE255 pKa = 4.42EE256 pKa = 3.9VAQFIEE262 pKa = 4.31EE263 pKa = 4.58TYY265 pKa = 10.95DD266 pKa = 3.4GAVISARR273 pKa = 11.84SAA275 pKa = 3.04

Molecular weight: 28.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5J6V9A1|A0A5J6V9A1_9MICO TetR/AcrR family transcriptional regulator OS=Ornithinimicrobium pratense OX=2593973 GN=FY030_14235 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 9.97KK16 pKa = 9.33HH17 pKa = 4.25GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILNARR35 pKa = 11.84RR36 pKa = 11.84TKK38 pKa = 10.61GRR40 pKa = 11.84SSLSAA45 pKa = 3.62

Molecular weight: 5.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3076

0

3076

1029995

24

2025

334.8

35.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.759 ± 0.06

0.651 ± 0.013

6.117 ± 0.04

6.07 ± 0.043

2.509 ± 0.026

9.479 ± 0.04

2.34 ± 0.021

3.35 ± 0.031

1.529 ± 0.025

10.686 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.933 ± 0.017

1.55 ± 0.021

5.905 ± 0.035

3.424 ± 0.021

7.791 ± 0.045

5.066 ± 0.028

6.023 ± 0.032

9.392 ± 0.04

1.602 ± 0.018

1.823 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski