Hedyotis uncinella yellow mosaic virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 8.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S5S0Z4|S5S0Z4_9GEMI Protein V2 OS=Hedyotis uncinella yellow mosaic virus OX=1428190 PE=3 SV=1
MM1 pKa = 7.88PPPKK5 pKa = 10.14KK6 pKa = 10.34FQINAKK12 pKa = 9.94NYY14 pKa = 7.96FLTYY18 pKa = 9.06PKK20 pKa = 10.53CSLTKK25 pKa = 10.62EE26 pKa = 3.61EE27 pKa = 5.48ALAQFQNLDD36 pKa = 2.94IPINKK41 pKa = 9.45KK42 pKa = 9.63YY43 pKa = 10.79IKK45 pKa = 9.69ICRR48 pKa = 11.84EE49 pKa = 3.74LHH51 pKa = 6.25EE52 pKa = 5.87DD53 pKa = 4.22GSPHH57 pKa = 6.5LHH59 pKa = 6.04VLVQFEE65 pKa = 4.27GKK67 pKa = 9.66YY68 pKa = 9.5RR69 pKa = 11.84CTNNRR74 pKa = 11.84FFDD77 pKa = 3.9LVSPSRR83 pKa = 11.84SAHH86 pKa = 4.9FHH88 pKa = 6.45PNIQGAKK95 pKa = 9.25SSSDD99 pKa = 3.11VKK101 pKa = 11.24SYY103 pKa = 10.79IDD105 pKa = 3.7KK106 pKa = 11.33DD107 pKa = 3.49GDD109 pKa = 3.67TLEE112 pKa = 4.14WGEE115 pKa = 3.94FQIDD119 pKa = 3.13ARR121 pKa = 11.84SARR124 pKa = 11.84GGQQSANDD132 pKa = 4.12AYY134 pKa = 10.84AKK136 pKa = 10.61ALNTGSKK143 pKa = 10.29SEE145 pKa = 3.93ALNVIRR151 pKa = 11.84EE152 pKa = 4.21LAPKK156 pKa = 10.52DD157 pKa = 3.64FVLQFHH163 pKa = 6.68NLNSNLDD170 pKa = 4.08RR171 pKa = 11.84IFTPPAEE178 pKa = 4.47VYY180 pKa = 10.38VSPFSSSSFDD190 pKa = 3.41QVPEE194 pKa = 3.96EE195 pKa = 4.18LEE197 pKa = 4.15CWVSEE202 pKa = 4.13NVMGAAARR210 pKa = 11.84PWRR213 pKa = 11.84PNSIVIEE220 pKa = 4.34GDD222 pKa = 3.08SRR224 pKa = 11.84TGKK227 pKa = 8.52TMWARR232 pKa = 11.84SLGPHH237 pKa = 6.71NYY239 pKa = 10.18LCGHH243 pKa = 7.38LDD245 pKa = 4.18LSPKK249 pKa = 10.02VYY251 pKa = 10.89SNEE254 pKa = 3.02AWYY257 pKa = 10.82NVIDD261 pKa = 5.29DD262 pKa = 4.41VDD264 pKa = 3.61PHH266 pKa = 5.85YY267 pKa = 11.0LKK269 pKa = 10.7HH270 pKa = 6.2FKK272 pKa = 10.7EE273 pKa = 4.46FMGAQRR279 pKa = 11.84DD280 pKa = 3.81WQSNTKK286 pKa = 9.26YY287 pKa = 10.63GKK289 pKa = 9.49PIQIKK294 pKa = 10.42GGIPTIFLCNPGPTSSYY311 pKa = 11.03KK312 pKa = 10.55EE313 pKa = 3.94YY314 pKa = 10.94LDD316 pKa = 3.87EE317 pKa = 4.82EE318 pKa = 4.67KK319 pKa = 11.16NSALKK324 pKa = 10.45AWAIKK329 pKa = 9.72NAEE332 pKa = 4.62FITLTEE338 pKa = 4.09PLYY341 pKa = 11.19SGTNQSPAQNSQEE354 pKa = 3.98KK355 pKa = 9.31TNPEE359 pKa = 3.98TEE361 pKa = 4.16GG362 pKa = 3.3

Molecular weight: 40.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S5REP9|S5REP9_9GEMI AC5 protein OS=Hedyotis uncinella yellow mosaic virus OX=1428190 PE=4 SV=1
MM1 pKa = 7.63SKK3 pKa = 10.39RR4 pKa = 11.84PADD7 pKa = 3.69MVFSTPVSRR16 pKa = 11.84VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFDD24 pKa = 3.26TPGVTRR30 pKa = 11.84VAAPTVRR37 pKa = 11.84ATNRR41 pKa = 11.84RR42 pKa = 11.84RR43 pKa = 11.84MWINRR48 pKa = 11.84PMYY51 pKa = 9.4RR52 pKa = 11.84KK53 pKa = 8.79PRR55 pKa = 11.84IYY57 pKa = 10.75RR58 pKa = 11.84MYY60 pKa = 10.25RR61 pKa = 11.84SPDD64 pKa = 3.16VPYY67 pKa = 10.77GCEE70 pKa = 4.42GPCKK74 pKa = 10.14VQSFEE79 pKa = 3.84QRR81 pKa = 11.84HH82 pKa = 6.27DD83 pKa = 3.18IAHH86 pKa = 6.1TGKK89 pKa = 10.34VICVSDD95 pKa = 3.47VTRR98 pKa = 11.84GNGLTHH104 pKa = 6.89RR105 pKa = 11.84VGKK108 pKa = 9.66RR109 pKa = 11.84FCVKK113 pKa = 9.94SVYY116 pKa = 10.62VLGKK120 pKa = 9.71VWMDD124 pKa = 3.25EE125 pKa = 4.06NIKK128 pKa = 9.31TKK130 pKa = 10.61NHH132 pKa = 6.03TNTVMFFVVRR142 pKa = 11.84DD143 pKa = 3.74RR144 pKa = 11.84RR145 pKa = 11.84PFGTPMDD152 pKa = 4.58FGQVFNMYY160 pKa = 10.66DD161 pKa = 3.86NEE163 pKa = 4.34PSTATVKK170 pKa = 10.66NDD172 pKa = 2.91LRR174 pKa = 11.84GRR176 pKa = 11.84YY177 pKa = 8.35QVLRR181 pKa = 11.84RR182 pKa = 11.84FTAMATGGQYY192 pKa = 10.93ASKK195 pKa = 10.11EE196 pKa = 3.81QALVRR201 pKa = 11.84KK202 pKa = 9.46FMKK205 pKa = 10.51LNNHH209 pKa = 4.96VCYY212 pKa = 10.35NHH214 pKa = 6.24QEE216 pKa = 3.69AAKK219 pKa = 10.4YY220 pKa = 9.25EE221 pKa = 4.13NHH223 pKa = 6.46TEE225 pKa = 3.99NALLLYY231 pKa = 7.29MACTHH236 pKa = 7.07ASNPVYY242 pKa = 9.86ATLKK246 pKa = 9.47IRR248 pKa = 11.84IYY250 pKa = 10.67FYY252 pKa = 11.26DD253 pKa = 3.51SVSNN257 pKa = 3.9

Molecular weight: 29.88 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9

0

9

1486

96

362

165.1

18.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.374 ± 0.815

2.355 ± 0.455

4.576 ± 0.35

4.307 ± 0.71

4.105 ± 0.616

4.643 ± 0.356

3.836 ± 0.501

7.201 ± 1.23

4.98 ± 0.814

8.546 ± 1.418

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.826 ± 0.647

5.518 ± 0.616

5.989 ± 0.692

4.24 ± 0.423

7.402 ± 1.264

8.412 ± 1.294

6.46 ± 0.768

5.855 ± 0.98

1.346 ± 0.355

3.028 ± 0.649
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski